Mm10 Genome size statistics: Difference between revisions
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<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/10467 26]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH> | ||
<TH ALIGN=RIGHT>6,323</TH> | |||
<TD ALIGN=RIGHT>3,103,808,406</TD><TD ALIGN=RIGHT>2,769,099,677</TD> | |||
<TD ALIGN=RIGHT>334,708,729</TD><TD ALIGN=RIGHT>% 36.24</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Manatee]</TD><TH ALIGN=CENTER>150X</TH> | |||
<TH ALIGN=CENTER>14442683</TH> | |||
<TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>N/A</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 27]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH> | |||
<TH ALIGN=RIGHT>96,944</TH> | <TH ALIGN=RIGHT>96,944</TH> | ||
<TD ALIGN=RIGHT>1,996,076,410</TD><TD ALIGN=RIGHT>1,839,436,660</TD> | <TD ALIGN=RIGHT>1,996,076,410</TD><TD ALIGN=RIGHT>1,839,436,660</TD> | ||
| Line 270: | Line 279: | ||
<TH ALIGN=CENTER>124060</TH> | <TH ALIGN=CENTER>124060</TH> | ||
<TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>27.345%</TD> | <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>27.345%</TD> | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
| Line 308: | Line 308: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/armadillo/dasNov2/ | <TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 31]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH> | ||
<TH ALIGN=RIGHT>2,353</TH> | |||
<TD ALIGN=RIGHT>3,196,760,833</TD><TD ALIGN=RIGHT>3,118,565,340</TD> | |||
<TD ALIGN=RIGHT>78,195,493</TD><TD ALIGN=RIGHT>% 47.63</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Elephant]</TD><TH ALIGN=CENTER>7X</TH> | |||
<TH ALIGN=CENTER>46401353</TH> | |||
<TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>25.823%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/armadillo/dasNov2/ 32]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov2 dasNov2]</TH> | |||
<TH ALIGN=RIGHT>292,141</TH> | <TH ALIGN=RIGHT>292,141</TH> | ||
<TD ALIGN=RIGHT>4,813,823,562</TD><TD ALIGN=RIGHT>2,371,493,872</TD> | <TD ALIGN=RIGHT>4,813,823,562</TD><TD ALIGN=RIGHT>2,371,493,872</TD> | ||
| Line 317: | Line 326: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/614 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/614 33]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH> | ||
<TH ALIGN=RIGHT>11,654</TH> | <TH ALIGN=RIGHT>11,654</TH> | ||
<TD ALIGN=RIGHT>2,034,575,300</TD><TD ALIGN=RIGHT>1,966,419,868</TD> | <TD ALIGN=RIGHT>2,034,575,300</TD><TD ALIGN=RIGHT>1,966,419,868</TD> | ||
| Line 326: | Line 335: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/82 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/82 34]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH> | ||
<TH ALIGN=RIGHT>11,692</TH> | <TH ALIGN=RIGHT>11,692</TH> | ||
<TD ALIGN=RIGHT>2,981,119,579</TD><TD ALIGN=RIGHT>2,804,673,174</TD> | <TD ALIGN=RIGHT>2,981,119,579</TD><TD ALIGN=RIGHT>2,804,673,174</TD> | ||
| Line 335: | Line 344: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/83 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/83 35]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]</TH> | ||
<TH ALIGN=RIGHT>1,218</TH> | <TH ALIGN=RIGHT>1,218</TH> | ||
<TD ALIGN=RIGHT>2,860,512,983</TD><TD ALIGN=RIGHT>1,201,271,277</TD> | <TD ALIGN=RIGHT>2,860,512,983</TD><TD ALIGN=RIGHT>1,201,271,277</TD> | ||
| Line 344: | Line 353: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/2488 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/771 36]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]</TH> | ||
<TH ALIGN=RIGHT>187,558</TH> | |||
<TD ALIGN=RIGHT>3,445,784,354</TD><TD ALIGN=RIGHT>1,923,624,051</TD> | |||
<TD ALIGN=RIGHT>1,522,160,303</TD><TD ALIGN=RIGHT>% 11.44</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/bioproject/74593 Pika]</TD><TH ALIGN=CENTER>2X</TH> | |||
<TH ALIGN=CENTER>88760</TH> | |||
<TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>14.542%</TD> | |||
<TD ALIGN=RIGHT>3000</TD> | |||
<TD ALIGN=CENTER>medium</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/2488 37]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1]</TH> | |||
<TH ALIGN=RIGHT>295,006</TH> | <TH ALIGN=RIGHT>295,006</TH> | ||
<TD ALIGN=RIGHT>2,985,258,999</TD><TD ALIGN=RIGHT>2,407,847,681</TD> | <TD ALIGN=RIGHT>2,985,258,999</TD><TD ALIGN=RIGHT>2,407,847,681</TD> | ||
| Line 353: | Line 371: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/ 38]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]</TH> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/ | |||
<TH ALIGN=RIGHT>379,802</TH> | <TH ALIGN=RIGHT>379,802</TH> | ||
<TD ALIGN=RIGHT>3,367,787,358</TD><TD ALIGN=RIGHT>2,133,134,836</TD> | <TD ALIGN=RIGHT>3,367,787,358</TD><TD ALIGN=RIGHT>2,133,134,836</TD> | ||
| Line 371: | Line 380: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ 39]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1]</TH> | ||
<TH ALIGN=RIGHT>325,491</TH> | <TH ALIGN=RIGHT>325,491</TH> | ||
<TD ALIGN=RIGHT>3,823,724,728</TD><TD ALIGN=RIGHT>2,111,581,369</TD> | <TD ALIGN=RIGHT>3,823,724,728</TD><TD ALIGN=RIGHT>2,111,581,369</TD> | ||
| Line 380: | Line 389: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/ 40]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1]</TH> | ||
<TH ALIGN=RIGHT>262,057</TH> | <TH ALIGN=RIGHT>262,057</TH> | ||
<TD ALIGN=RIGHT>2,936,119,008</TD><TD ALIGN=RIGHT>1,832,864,697</TD> | <TD ALIGN=RIGHT>2,936,119,008</TD><TD ALIGN=RIGHT>1,832,864,697</TD> | ||
| Line 389: | Line 398: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/233 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/233 41]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH> | ||
<TH ALIGN=RIGHT>277,711</TH> | <TH ALIGN=RIGHT>277,711</TH> | ||
<TD ALIGN=RIGHT>3,075,184,024</TD><TD ALIGN=RIGHT>2,536,076,954</TD> | <TD ALIGN=RIGHT>3,075,184,024</TD><TD ALIGN=RIGHT>2,536,076,954</TD> | ||
| Line 398: | Line 407: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/mammals/opossum | <TR><TH ALIGN=RIGHT>[http://www.broadinstitute.org/mammals/opossum 42]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH> | ||
<TH ALIGN=RIGHT>11</TH> | <TH ALIGN=RIGHT>11</TH> | ||
<TD ALIGN=RIGHT>3,605,631,728</TD><TD ALIGN=RIGHT>3,501,660,299</TD> | <TD ALIGN=RIGHT>3,605,631,728</TD><TD ALIGN=RIGHT>3,501,660,299</TD> | ||
| Line 407: | Line 416: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/3066 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/3066 43]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH> | ||
<TH ALIGN=RIGHT>35,974</TH> | <TH ALIGN=RIGHT>35,974</TH> | ||
<TD ALIGN=RIGHT>3,174,693,010</TD><TD ALIGN=RIGHT>2,931,539,702</TD> | <TD ALIGN=RIGHT>3,174,693,010</TD><TD ALIGN=RIGHT>2,931,539,702</TD> | ||
| Line 416: | Line 425: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/10765 44]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH> | ||
<TH ALIGN=RIGHT>25,212</TH> | |||
<TD ALIGN=RIGHT>1,117,373,619</TD><TD ALIGN=RIGHT>1,086,614,815</TD> | |||
</ | <TD ALIGN=RIGHT>30,758,804</TD><TD ALIGN=RIGHT>% 19.62</TD> | ||
< | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Budgerigar]</TD><TH ALIGN=CENTER>7X</TH> | ||
<TH ALIGN=CENTER>10614383</TH> | |||
<TH ALIGN= | <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD> | ||
</TR> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/110 45]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/110 45]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH> | ||
<TH ALIGN=RIGHT>201,523</TH> | <TH ALIGN=RIGHT>201,523</TH> | ||
| Line 433: | Line 443: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/111 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/12107 46]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH> | ||
<TH ALIGN=RIGHT>80,984</TH> | |||
<TD ALIGN=RIGHT>2,589,745,704</TD><TD ALIGN=RIGHT>2,158,289,746</TD> | |||
<TD ALIGN=RIGHT>431,455,958</TD><TD ALIGN=RIGHT>% 31.20</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Painted turtle]</TD><TH ALIGN=CENTER>15X</TH> | |||
<TH ALIGN=CENTER>5212367</TH> | |||
<TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>N/A</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/111 47]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH> | |||
<TH ALIGN=RIGHT>15,932</TH> | <TH ALIGN=RIGHT>15,932</TH> | ||
<TD ALIGN=RIGHT>1,046,932,099</TD><TD ALIGN=RIGHT>1,032,854,810</TD> | <TD ALIGN=RIGHT>1,046,932,099</TD><TD ALIGN=RIGHT>1,032,854,810</TD> | ||
| Line 442: | Line 461: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/367 | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/367 48]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH> | ||
<TH ALIGN=RIGHT>70</TH> | <TH ALIGN=RIGHT>70</TH> | ||
<TD ALIGN=RIGHT>1,233,186,341</TD><TD ALIGN=RIGHT>1,222,864,691</TD> | <TD ALIGN=RIGHT>1,233,186,341</TD><TD ALIGN=RIGHT>1,222,864,691</TD> | ||
| Line 451: | Line 470: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ | <TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 49]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH> | ||
<TH ALIGN=RIGHT>6,457</TH> | |||
<TD ALIGN=RIGHT>1,799,143,587</TD><TD ALIGN=RIGHT>1,701,353,767</TD> | |||
<TD ALIGN=RIGHT>97,789,820</TD><TD ALIGN=RIGHT>% 41.98</TD> | |||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Lizard]</TD><TH ALIGN=CENTER>7.1X</TH> | |||
<TH ALIGN=CENTER>150641573</TH> | |||
<TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD> | |||
<TD ALIGN=RIGHT>1000</TD> | |||
<TD ALIGN=CENTER>N/A</TD></TR> | |||
<TR><TH ALIGN=RIGHT>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 50]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH> | |||
<TH ALIGN=RIGHT>5,891</TH> | <TH ALIGN=RIGHT>5,891</TH> | ||
<TD ALIGN=RIGHT>1,061,817,101</TD><TD ALIGN=RIGHT>935,922,386</TD> | <TD ALIGN=RIGHT>1,061,817,101</TD><TD ALIGN=RIGHT>935,922,386</TD> | ||
| Line 457: | Line 485: | ||
<TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Turkey]</TD><TH ALIGN=CENTER>5X</TH> | <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Turkey]</TD><TH ALIGN=CENTER>5X</TH> | ||
<TH ALIGN=CENTER>74864452</TH> | <TH ALIGN=CENTER>74864452</TH> | ||
<TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD> | <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD> | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
Revision as of 20:33, 29 March 2012
see also
- Mouse 60-way Mm10 conservation alignment
- Mouse 60-way Mm10 conservation lastz parameters
- all other UCSC Multiple Alignments
statistics collected from UCSC 2bit files
- The external link in the first column goes to the FTP location where the genome sequence was obtained
- The external links from the UCSC database name go to the UCSC genome-test browser for that genome
- N bases == unknown bases in the assembly marked by "N"
- non-N bases == called bases in the assembly
- total size == all bases in assembly, N and non-N
- The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
- The common name external links go to information pages for this genome
- The coverage numbers are taken directly from information README files from the sequencing center
- The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser
do not edit, automatically generated table
| order count/ ftp src |
ucsc db name/ genome-test |
chrom count |
total size |
non-N bases |
N base count |
% masked | common name/ src info |
coverage | N50 chrom.sizes |
alignment type | % of mm10 matched (chainLink table) |
chain minScore |
chain linearGap |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | mm10 | 66 | 2,730,871,774 | 2,652,783,500 | 78,088,274 | % 45.18 | Mouse | 20X | 130694993 | N/A | N/A | N/A | N/A |
| 02 | rn4 | 45 | 2,834,127,293 | 2,566,294,765 | 267,832,528 | % 44.29 | Rat | 20X | 143002779 | SyntenicNet | 54.645% | 5000 | medium |
| 03 | speTri2 | 12,483 | 2,478,393,770 | 2,311,060,300 | 167,333,470 | % 36.27 | Squirrel | 495X | 8192786 | SyntenicNet | 34.217% | 3000 | medium |
| 04 | micMur1 | 185,042 | 2,902,270,736 | 1,852,394,361 | 1,049,876,375 | % 37.31 | Mouse lemur | 2X | 140884 | SyntenicNet | 26.636% | 3000 | medium |
| 05 | dipOrd1 | 210,053 | 2,158,502,098 | 1,844,961,421 | 313,540,677 | % 28.28 | Kangaroo rat | 2X | 36427 | SyntenicNet | 19.460% | 3000 | medium |
| 06 | saiBol1 | 2,685 | 2,608,572,064 | 2,477,131,095 | 131,440,969 | % 46.69 | Squirrel monkey | 80X | 18744880 | SyntenicNet | 32.339% | 3000 | medium |
| 07 | hetGla1 | 39,267 | 2,643,978,223 | 2,430,064,805 | 213,913,418 | % 32.64 | Naked mole-rat | 90X | 1603177 | SyntenicNet | 32.163% | 3000 | medium |
| 08 | hg19 | 93 | 3,137,161,264 | 2,897,310,462 | 239,850,802 | % 50.63 | Human | 20X | 146364022 | SyntenicNet | 38.226% | 3000 | medium |
| 09 | gorGor3 | 46,823 | 3,029,553,646 | 2,822,760,080 | 206,793,566 | % 48.80 | Gorilla | 2.1X | 145327772 | SyntenicNet | 33.987% | 3000 | medium |
| 10 | panTro4 | 24,129 | 3,309,577,922 | 2,902,338,967 | 407,238,955 | % 51.29 | Chimp | 6X | 143986469 | SyntenicNet | 34.674% | 3000 | medium |
| 11 | nomLeu1 | 17,968 | 2,936,035,333 | 2,756,591,777 | 179,443,556 | % 50.82 | Gibbon | 5.6X | 22692035 | SyntenicNet | 34.132% | 3000 | medium |
| 12 | ponAbe2 | 55 | 3,446,771,396 | 3,093,543,172 | 353,228,224 | % 50.89 | Orangutan | 6X | 135191526 | SyntenicNet | 34.496% | 3000 | medium |
| 13 | tarSyr1 | 656,709 | 3,179,905,132 | 2,768,536,343 | 411,368,789 | % 41.75 | Tarsier | 2X | 12214 | SyntenicNet | 24.560% | 3000 | medium |
| 14 | rheMac3 | 34,103 | 2,969,988,180 | 2,639,145,830 | 330,842,350 | % 48.54 | Chinese rhesus | 50X | 150158102 | SyntenicNet | 33.931% | 3000 | medium |
| 15 | papHam1 | 387,374 | 2,867,564,654 | 2,741,849,051 | 125,715,603 | % 48.70 | Baboon | 5.3X | 88525 | SyntenicNet | 33.577% | 3000 | medium |
| 16 | otoGar3 | 7,793 | 2,519,724,550 | 2,359,530,453 | 160,194,097 | % 39.51 | Bushbaby | 137X | 13852661 | SyntenicNet | 29.795% | 3000 | medium |
| 17 | calJac3 | 14,205 | 2,914,958,544 | 2,752,505,800 | 162,452,744 | % 47.71 | Marmoset | 6X | 132174527 | SyntenicNet | 32.450% | 3000 | medium |
| 18 | equCab2 | 34 | 2,484,532,062 | 2,428,790,173 | 55,741,889 | % 40.97 | Horse | 6.8X | 91571448 | SyntenicNet | 34.415% | 3000 | medium |
| 19 | cavPor3 | 3,144 | 2,723,219,641 | 2,663,369,733 | 59,849,908 | % 27.53 | Guinea pig | 6.76X | 27942054 | SyntenicNet | 28.447% | 3000 | medium |
| 20 | vicPac1 | 298,413 | 2,962,253,608 | 1,922,910,435 | 1,039,343,173 | % 32.24 | Alpaca | 2X | 230521 | SyntenicNet | 22.636% | 3000 | medium |
| 21 | turTru1 | 116,467 | 2,519,048,486 | 2,298,444,090 | 220,604,396 | % 43.86 | Dolphin | 2X | 166056 | SyntenicNet | 28.761% | 3000 | medium |
| 22 | tupBel1 | 150,851 | 3,660,774,957 | 2,137,225,476 | 1,523,549,481 | % 20.43 | Tree shrew | 2X | 127888 | SyntenicNet | 19.766% | 3000 | medium |
| 23 | susScr2 | 20 | 2,262,501,571 | 2,231,298,548 | 31,203,023 | % 42.41 | Pig | 24X | 134541103 | SyntenicNet | 23.248% | 3000 | medium |
| 24 | oryCun2 | 3,242 | 2,737,490,501 | 2,604,023,284 | 133,467,217 | % 43.74 | Rabbit | 6.51X | 111795807 | SyntenicNet | 25.248% | 3000 | medium |
| 25 | choHof1 | 481,259 | 2,458,927,620 | 2,060,419,685 | 398,507,935 | % 35.67 | Sloth | 2X | 9667 | SyntenicNet | N/A | 3000 | medium |
| 26 | triMan1 | 6,323 | 3,103,808,406 | 2,769,099,677 | 334,708,729 | % 36.24 | Manatee | 150X | 14442683 | N/A | N/A | 1000 | N/A |
| 27 | pteVam1 | 96,944 | 1,996,076,410 | 1,839,436,660 | 156,639,750 | % 31.75 | Megabat | 2X | 124060 | SyntenicNet | 27.345% | 3000 | medium |
| 28 | felCat4 | 104,054 | 3,160,303,948 | 1,990,635,005 | 1,169,668,943 | % 40.58 | Cat | 2.8X | 164876586 | SyntenicNet | 24.033% | 3000 | medium |
| 29 | ailMel1 | 81,467 | 2,299,509,015 | 2,245,312,831 | 54,196,184 | % 38.96 | Panda | 73X | 1281781 | SyntenicNet | 30.979% | 3000 | medium |
| 30 | canFam3 | 3,268 | 2,410,976,875 | 2,392,715,236 | 18,261,639 | % 43.01 | Dog | 7.6X | 63241923 | SyntenicNet | 29.144% | 3000 | medium |
| 31 | loxAfr3 | 2,353 | 3,196,760,833 | 3,118,565,340 | 78,195,493 | % 47.63 | Elephant | 7X | 46401353 | SyntenicNet | 25.823% | 3000 | medium |
| 32 | dasNov2 | 292,141 | 4,813,823,562 | 2,371,493,872 | 2,442,329,690 | % 37.23 | Armadillo | 2X | 55360 | SyntenicNet | 17.004% | 3000 | medium |
| 33 | myoLuc2 | 11,654 | 2,034,575,300 | 1,966,419,868 | 68,155,432 | % 33.71 | Microbat | 2.18X | 4293315 | SyntenicNet | 24.363% | 3000 | medium |
| 34 | bosTau7 | 11,692 | 2,981,119,579 | 2,804,673,174 | 176,446,405 | % 49.56 | Cow | 7.1X | 85119472 | SyntenicNet | 26.255% | 3000 | medium |
| 35 | oviAri1 | 1,218 | 2,860,512,983 | 1,201,271,277 | 1,659,241,706 | % 0.00 | Sheep | 3X | 100831284 | SyntenicNet | 15.341% | 3000 | medium |
| 36 | ochPri2 | 187,558 | 3,445,784,354 | 1,923,624,051 | 1,522,160,303 | % 11.44 | Pika | 2X | 88760 | SyntenicNet | 14.542% | 3000 | medium |
| 37 | proCap1 | 295,006 | 2,985,258,999 | 2,407,847,681 | 577,411,318 | % 28.11 | Rock hyrax | 2X | 24297 | SyntenicNet | 15.147% | 3000 | medium |
| 38 | eriEur1 | 379,802 | 3,367,787,358 | 2,133,134,836 | 1,234,652,522 | % 50.89 | Hedgehog | 2X | 33565 | SyntenicNet | 9.856% | 3000 | medium |
| 39 | echTel1 | 325,491 | 3,823,724,728 | 2,111,581,369 | 1,712,143,359 | % 13.84 | Tenrec | 2X | 48377 | SyntenicNet | 10.947% | 3000 | medium |
| 40 | sorAra1 | 262,057 | 2,936,119,008 | 1,832,864,697 | 1,103,254,311 | % 39.07 | Shrew | 2X | 47941 | SyntenicNet | 9.382% | 3000 | medium |
| 41 | macEug2 | 277,711 | 3,075,184,024 | 2,536,076,954 | 539,107,070 | % 47.39 | Wallaby | 2X | 36602 | SyntenicNet | 4.353% | 3000 | medium |
| 42 | monDom5 | 11 | 3,605,631,728 | 3,501,660,299 | 103,971,429 | % 55.95 | Opossum | 6.8X | 527952102 | N/A | N/A | 1000 | N/A |
| 43 | sarHar1 | 35,974 | 3,174,693,010 | 2,931,539,702 | 243,153,308 | % 39.66 | Tasmanian devil | 85X | 1847106 | N/A | N/A | 1000 | N/A |
| 44 | melUnd1 | 25,212 | 1,117,373,619 | 1,086,614,815 | 30,758,804 | % 19.62 | Budgerigar | 7X | 10614383 | N/A | N/A | 1000 | N/A |
| 45 | ornAna1 | 201,523 | 1,996,811,212 | 1,842,235,522 | 154,575,690 | % 47.89 | Platypus | 6X | 991605 | N/A | N/A | 1000 | N/A |
| 46 | chrPic1 | 80,984 | 2,589,745,704 | 2,158,289,746 | 431,455,958 | % 31.20 | Painted turtle | 15X | 5212367 | N/A | N/A | 1000 | N/A |
| 47 | galGal4 | 15,932 | 1,046,932,099 | 1,032,854,810 | 14,077,289 | % 20.41 | Chicken | 12X | 90216835 | N/A | N/A | 1000 | N/A |
| 48 | taeGut1 | 70 | 1,233,186,341 | 1,222,864,691 | 10,321,650 | % 20.42 | Zebra finch | 6X | 73657157 | N/A | N/A | 1000 | N/A |
| 49 | anoCar2 | 6,457 | 1,799,143,587 | 1,701,353,767 | 97,789,820 | % 41.98 | Lizard | 7.1X | 150641573 | N/A | N/A | 1000 | N/A |
| 50 | melGal1 | 5,891 | 1,061,817,101 | 935,922,386 | 125,894,715 | % 6.60 | Turkey | 5X | 74864452 | N/A | N/A | 1000 | N/A |
| 51 | xenTro3 | 19,550 | 1,511,735,326 | 1,358,334,882 | 153,400,444 | % 24.55 | X. tropicalis | 7.65X | 1567461 | N/A | N/A | 1000 | N/A |
| 52 | latCha1 | 22,819 | 2,860,591,921 | 2,183,592,768 | 676,999,153 | % 45.68 | Coelacanth | 77.5X | 924513 | N/A | N/A | 1000 | N/A |
| 53 | gadMor1 | 427,428 | 824,327,835 | 608,038,555 | 216,289,280 | % 31.25 | Atlantic cod | 40X | 393166 | N/A | N/A | 1000 | N/A |
| 54 | oreNil1 | 5,901 | 927,742,539 | 816,084,674 | 111,657,865 | % 25.51 | Nile tilapia | 269X | 2802423 | N/A | N/A | 1000 | N/A |
| 55 | gasAcu1 | 23 | 463,354,448 | 446,627,861 | 16,726,587 | % 2.58 | Stickleback | 6X | 20083130 | N/A | N/A | 1000 | N/A |
| 56 | fr3 | 6,835 | 391,484,715 | 350,961,831 | 40,522,884 | % 19.01 | Fugu | 8.5X | 11516971 | N/A | N/A | 1000 | N/A |
| 57 | tetNig2 | 27 | 358,618,246 | 302,314,788 | 56,303,458 | % 20.27 | Tetraodon | 7.9X | 13390619 | N/A | N/A | 1000 | N/A |
| 58 | danRer7 | 1,133 | 1,412,464,843 | 1,409,770,109 | 2,694,734 | % 52.06 | Zebrafish | 30X | 54093808 | N/A | N/A | 1000 | N/A |
| 59 | oryLat2 | 7,189 | 869,000,216 | 700,386,597 | 168,613,619 | % 33.09 | Medaka | 10.6X | 29908082 | N/A | N/A | 1000 | N/A |
| 60 | petMar1 | 108,241 | 1,027,258,967 | 831,696,438 | 195,562,529 | % 40.67 | Lamprey | 5.9X | 14239 | N/A | N/A | 1000 | N/A |
