High Throughput Genome Builds: Difference between revisions
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==Candidate Genomes== | ==Candidate Genomes== | ||
platypus(new + update), frog update, Stickleback(fish)(new + update), Medaka(fish), | (A)platypus(new + update), (A)frog update, (A)Stickleback(fish)(new + update), (A)Medaka(fish), | ||
rhesus update, chicken update, elephant, rabbit(new + update), pig(new + update), | (B)rhesus update, (B)chicken update, (A)elephant, (B)rabbit(new + update), (A)pig(new + update), | ||
cat(new + update), fugu update, chimp update | (B)cat(new + update), (A)fugu update, (B)chimp update, (C)mouse, (C)human | ||
Revision as of 21:49, 30 May 2006
Input Requirements
AGP File, Sequence
Output Tracks
Gap. Gold, ChromInfo, GC5
Then Repeat Masking/Window Masker and trfBig
Produces rmsk/windowMask and simpleRepeats track
Early Tracks
Genscan, Genbank Scripts, CpG Islands
Map Closest protein set (human mostly)
Comparative Genomics
human and mouse
Candidate Genomes
(A)platypus(new + update), (A)frog update, (A)Stickleback(fish)(new + update), (A)Medaka(fish), (B)rhesus update, (B)chicken update, (A)elephant, (B)rabbit(new + update), (A)pig(new + update), (B)cat(new + update), (A)fugu update, (B)chimp update, (C)mouse, (C)human
