TarSyr2 17-way conservation alignment: Difference between revisions

Revision as of 04:55, 20 December 2014

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to assembly sequence	UCSC db name/ genome-preview browser	Scientific name/ assembly information	Common name	assembly date (version)	source version	Repeat Masker	Window Masker	chain on tarSyr2	% of tarSyr2 matched (chainLink table)
01	tarSyr2	Tarsius syrichta	Tarsier	Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)	Washington University	2014-11-21	2014-11-22	N/A	N/A
02	panPan1	Pan paniscus	Bonobo	May. 2012 (Max-Planck/panPan1)	Max-Planck Institute panpan1 (GCA_000258665.1)	2013-03-05	2013-03-07	2014-12-16	52.289%
03	panTro4	Pan troglodytes	Chimp	Feb. 2011 (CSAC 2.1.4/panTro4)	CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4)	2012-01-09	2012-01-09	2014-12-15	51.284%
04	ponAbe2	Pongo pygmaeus abelii	Orangutan	July 2007 (WUGSC 2.0.2/ponAbe2)	WUSTL 3.0	2009-08-15	2013-06-21	2014-12-13	51.302%
05	gorGor3	Gorilla gorilla gorilla	Gorilla	May 2011 (gorGor3.1/gorGor3)	Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1)	2011-11-16	2013-06-21	2014-12-13	50.262%
06	nomLeu3	Nomascus leucogenys	Gibbon	Oct. 2012 (GGSC Nleu3.0/nomLeu3)	Gibbon Genome Sequencing Consortium	2013-03-04	2013-03-01	2014-12-13	50.545%
07	macFas5	Macaca fascicularis	Crab-eating macaque	Jun 2013 (Macaca_fascicularis_5.0/macFas5)	Washington University (WashU) GCA_000364345.1	2013-06-30	2013-06-30	2014-12-16	51.814%
08	papAnu2	Papio anubis	Baboon	Mar. 2012 (Baylor Panu_2.0/papAnu2)	Baylor College of Medicine	2012-07-22	2012-08-07	2014-12-15	51.652%
09	rheMac3	Macaca mulatta	Rhesus	Oct. 2010 (BGI CR_1.0/rheMac3)	Beijing Genomics Institute, Shenzhen (GCA_000230795.1)	2011-12-30	2012-01-03	2014-12-16	50.710%
10	chlSab2	Chlorocebus sabaeus	Green monkey	25 Mar-2014 (Chlorocebus_sabeus 1.1/chlSab2)	Vervet Genomics Consortium GCA_000409795.2	2014-04-10	2014-04-10	2014-12-16	51.691%
11	hg38	Homo sapiens	Human	Dec. 2013 (GRCh38/hg38)	GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2)	2014-01-10	2013-12-25	2014-12-13	52.305%
12	rhiRox1	Rhinopithecus roxellana	Golden snub-nosed monkey	Oct. 2014 (Rrox_v1/rhiRox1)	Novogene	2014-11-28	2014-11-27	2014-12-16	47.155%
13	nasLar1	Nasalis larvatus	Proboscis monkey	Nov. 2014 (Charlie1.0/nasLar1)	Proboscis Monkey Functional Genome Consortium	2014-12-12	2014-12-12	2014-12-16	47.164%
14	saiBol1	Saimiri boliviensis	Squirrel monkey	Oct. 2011 (Broad/saiBol1)	Broad SaiBol1.0 (GCA_000235385.1)	2012-01-07	2012-01-09	2014-12-15	48.208%
15	micMur1	Microcebus murinus	Mouse lemur	Jul. 2007 (Broad/micMur1)	Broad Institute micMur1 (NCBI project 19967, ABDC00000000)	2009-09-02	2012-05-04	2014-12-13	38.087%
16	calJac3	Callithrix jacchus	Marmoset	March 2009 (WUGSC 3.2/calJac3)	WUSTL 3.2 (GCA_000004665.1)	2010-02-05	2013-06-21	2014-12-13	48.629%
17	otoGar3	Otolemur garnettii	Bushbaby	Mar. 2011 (Broad/otoGar3)	Broad Institute (GCA_000181295.3)	2012-03-13	2012-03-14	2014-12-15	44.814%

@@ Line 32: / Line 32: @@
    <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
 </TR><TR>
-   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 02]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel&nbsp;monkey</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/49285 02]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan1 panPan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AJFE01 Pan<BR>paniscus]</TD><TD>Bonobo</TD>
-  <TD>Oct.&nbsp;2011&nbsp;(Broad/saiBol1)</TD>
-  <TD>Broad SaiBol1.0 (GCA_000235385.1)</TD>
-  <TD ALIGN=RIGHT>2012-01-07</TD>
-  <TD ALIGN=RIGHT>2012-01-09</TD>
-  <TD>2014-12-15</TD><TD ALIGN=RIGHT>48.208%</TD>
-</TR><TR>
-  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.15/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38]</TH><TD>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Homo<BR>sapiens]</TD><TD>Human</TD>
-  <TD>Dec.&nbsp;2013&nbsp;(GRCh38/hg38)</TD>
-  <TD>GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2)</TD>
-  <TD ALIGN=RIGHT>2014-01-10</TD>
-  <TD ALIGN=RIGHT>2013-12-25</TD>
-  <TD>2014-12-13</TD><TD ALIGN=RIGHT>52.305%</TD>
-</TR><TR>
-  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/49285 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan1 panPan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AJFE01 Pan<BR>paniscus]</TD><TD>Bonobo</TD>
    <TD>May.&nbsp;2012&nbsp;(Max-Planck/panPan1)</TD>
    <TD>Max-Planck Institute panpan1 (GCA_000258665.1)</TD>
@@ Line 53: / Line 39: @@
    <TD>2014-12-16</TD><TD ALIGN=RIGHT>52.289%</TD>
 </TR><TR>
-  <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABD02 Gorilla<BR>gorilla<BR>gorilla]</TD><TD>Gorilla</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/10627 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Pan<BR>troglodytes]</TD><TD>Chimp</TD>
-  <TD>May&nbsp;2011&nbsp;(gorGor3.1/gorGor3)</TD>
-  <TD>Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1)</TD>
-  <TD ALIGN=RIGHT>2011-11-16</TD>
-  <TD ALIGN=RIGHT>2013-06-21</TD>
-  <TD>2014-12-13</TD><TD ALIGN=RIGHT>50.262%</TD>
-</TR><TR>
-   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/10627 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Pan<BR>troglodytes]</TD><TD>Chimp</TD>
    <TD>Feb.&nbsp;2011&nbsp;(CSAC&nbsp;2.1.4/panTro4)</TD>
    <TD>CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4)</TD>
@@ Line 67: / Line 46: @@
    <TD>2014-12-15</TD><TD ALIGN=RIGHT>51.284%</TD>
 </TR><TR>
-  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000146795.3/ 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu_3.0/ Nomascus<BR>leucogenys]</TD><TD>Gibbon</TD>
+   <TH>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Pongo<BR>pygmaeus<BR>abelii]</TD><TD>Orangutan</TD>
-  <TD>Oct.&nbsp;2012&nbsp;(GGSC&nbsp;Nleu3.0/nomLeu3)</TD>
-  <TD>Gibbon Genome Sequencing Consortium </TD>
-  <TD ALIGN=RIGHT>2013-03-04</TD>
-  <TD ALIGN=RIGHT>2013-03-01</TD>
-  <TD>2014-12-13</TD><TD ALIGN=RIGHT>50.545%</TD>
-</TR><TR>
-   <TH>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Pongo<BR>pygmaeus<BR>abelii]</TD><TD>Orangutan</TD>
    <TD>July&nbsp;2007&nbsp;(WUGSC&nbsp;2.0.2/ponAbe2)</TD>
    <TD>WUSTL 3.0</TD>
@@ Line 81: / Line 53: @@
    <TD>2014-12-13</TD><TD ALIGN=RIGHT>51.302%</TD>
 </TR><TR>
-   <TH>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=JMHX01 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nasLar1 nasLar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA241312 Nasalis<BR>larvatus]</TD><TD>Proboscis&nbsp;monkey</TD>
+   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABD02 Gorilla<BR>gorilla<BR>gorilla]</TD><TD>Gorilla</TD>
-   <TD>Nov.&nbsp;2014&nbsp;(Charlie1.0/nasLar1)</TD>
+   <TD>May&nbsp;2011&nbsp;(gorGor3.1/gorGor3)</TD>
-   <TD>Proboscis Monkey Functional Genome Consortium</TD>
+   <TD>Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1)</TD>
-   <TD ALIGN=RIGHT>2014-12-12</TD>
+   <TD ALIGN=RIGHT>2011-11-16</TD>
-   <TD ALIGN=RIGHT>2014-12-12</TD>
+   <TD ALIGN=RIGHT>2013-06-21</TD>
-   <TD>2014-12-16</TD><TD ALIGN=RIGHT>47.164%</TD>
+   <TD>2014-12-13</TD><TD ALIGN=RIGHT>50.262%</TD>
 </TR><TR>
-   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA266995 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiRox1 rhiRox1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=JABR01 Rhinopithecus<BR>roxellana]</TD><TD>Golden&nbsp;snub-nosed&nbsp;monkey</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000146795.3/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu_3.0/ Nomascus<BR>leucogenys]</TD><TD>Gibbon</TD>
-  <TD>Oct.&nbsp;2014&nbsp;(Rrox_v1/rhiRox1)</TD>
+   <TD>Oct.&nbsp;2012&nbsp;(GGSC&nbsp;Nleu3.0/nomLeu3)</TD>
-  <TD>Novogene</TD>
+   <TD>Gibbon Genome Sequencing Consortium </TD>
-  <TD ALIGN=RIGHT>2014-11-28</TD>
+   <TD ALIGN=RIGHT>2013-03-04</TD>
-  <TD ALIGN=RIGHT>2014-11-27</TD>
+   <TD ALIGN=RIGHT>2013-03-01</TD>
-  <TD>2014-12-16</TD><TD ALIGN=RIGHT>47.155%</TD>
+   <TD>2014-12-13</TD><TD ALIGN=RIGHT>50.545%</TD>
-</TR><TR>
-  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA168621 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab2 chlSab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AQIB01 Chlorocebus<BR>sabaeus]</TD><TD>Green&nbsp;monkey</TD>
-   <TD>25&nbsp;Mar-2014&nbsp;(Chlorocebus_sabeus&nbsp;1.1/chlSab2)</TD>
-   <TD>Vervet Genomics Consortium GCA_000409795.2</TD>
-   <TD ALIGN=RIGHT>2014-04-10</TD>
-   <TD ALIGN=RIGHT>2014-04-10</TD>
-   <TD>2014-12-16</TD><TD ALIGN=RIGHT>51.691%</TD>
 </TR><TR>
-   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Macaca<BR>fascicularis]</TD><TD>Crab-eating&nbsp;macaque</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Macaca<BR>fascicularis]</TD><TD>Crab-eating&nbsp;macaque</TD>
    <TD>Jun&nbsp;2013&nbsp;(Macaca_fascicularis_5.0/macFas5)</TD>
    <TD>Washington University (WashU) GCA_000364345.1</TD>
@@ Line 109: / Line 74: @@
    <TD>2014-12-16</TD><TD ALIGN=RIGHT>51.814%</TD>
 </TR><TR>
-   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Rhesus</TD>
+  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/54005 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHZZ01 Papio<BR>anubis]</TD><TD>Baboon</TD>
+  <TD>Mar.&nbsp;2012&nbsp;(Baylor&nbsp;Panu_2.0/papAnu2)</TD>
+  <TD>Baylor College of Medicine</TD>
+  <TD ALIGN=RIGHT>2012-07-22</TD>
+  <TD ALIGN=RIGHT>2012-08-07</TD>
+  <TD>2014-12-15</TD><TD ALIGN=RIGHT>51.652%</TD>
+</TR><TR>
+   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Rhesus</TD>
    <TD>Oct.&nbsp;2010&nbsp;(BGI&nbsp;CR_1.0/rheMac3)</TD>
    <TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD>
@@ Line 116: / Line 88: @@
    <TD>2014-12-16</TD><TD ALIGN=RIGHT>50.710%</TD>
 </TR><TR>
-   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/54005 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHZZ01 Papio<BR>anubis]</TD><TD>Baboon</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA168621 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab2 chlSab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AQIB01 Chlorocebus<BR>sabaeus]</TD><TD>Green&nbsp;monkey</TD>
-   <TD>Mar.&nbsp;2012&nbsp;(Baylor&nbsp;Panu_2.0/papAnu2)</TD>
+   <TD>25&nbsp;Mar-2014&nbsp;(Chlorocebus_sabeus&nbsp;1.1/chlSab2)</TD>
-   <TD>Baylor College of Medicine</TD>
+  <TD>Vervet Genomics Consortium GCA_000409795.2</TD>
-   <TD ALIGN=RIGHT>2012-07-22</TD>
+  <TD ALIGN=RIGHT>2014-04-10</TD>
-   <TD ALIGN=RIGHT>2012-08-07</TD>
+  <TD ALIGN=RIGHT>2014-04-10</TD>
-   <TD>2014-12-15</TD><TD ALIGN=RIGHT>51.652%</TD>
+  <TD>2014-12-16</TD><TD ALIGN=RIGHT>51.691%</TD>
+</TR><TR>
+  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.15/ 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38]</TH><TD>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Homo<BR>sapiens]</TD><TD>Human</TD>
+  <TD>Dec.&nbsp;2013&nbsp;(GRCh38/hg38)</TD>
+  <TD>GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2)</TD>
+  <TD ALIGN=RIGHT>2014-01-10</TD>
+  <TD ALIGN=RIGHT>2013-12-25</TD>
+  <TD>2014-12-13</TD><TD ALIGN=RIGHT>52.305%</TD>
+</TR><TR>
+  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA266995 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiRox1 rhiRox1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=JABR01 Rhinopithecus<BR>roxellana]</TD><TD>Golden&nbsp;snub-nosed&nbsp;monkey</TD>
+  <TD>Oct.&nbsp;2014&nbsp;(Rrox_v1/rhiRox1)</TD>
+  <TD>Novogene</TD>
+  <TD ALIGN=RIGHT>2014-11-28</TD>
+  <TD ALIGN=RIGHT>2014-11-27</TD>
+  <TD>2014-12-16</TD><TD ALIGN=RIGHT>47.155%</TD>
+</TR><TR>
+  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA241312 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nasLar1 nasLar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=JMHX01 Nasalis<BR>larvatus]</TD><TD>Proboscis&nbsp;monkey</TD>
+  <TD>Nov.&nbsp;2014&nbsp;(Charlie1.0/nasLar1)</TD>
+   <TD>Proboscis Monkey Functional Genome Consortium</TD>
+   <TD ALIGN=RIGHT>2014-12-12</TD>
+   <TD ALIGN=RIGHT>2014-12-12</TD>
+   <TD>2014-12-16</TD><TD ALIGN=RIGHT>47.164%</TD>
 </TR><TR>
-   <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD>
+   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel&nbsp;monkey</TD>
-   <TD>March&nbsp;2009&nbsp;(WUGSC&nbsp;3.2/calJac3)</TD>
+   <TD>Oct.&nbsp;2011&nbsp;(Broad/saiBol1)</TD>
-   <TD>WUSTL 3.2 (GCA_000004665.1)</TD>
+   <TD>Broad SaiBol1.0 (GCA_000235385.1)</TD>
-   <TD ALIGN=RIGHT>2010-02-05</TD>
+   <TD ALIGN=RIGHT>2012-01-07</TD>
-   <TD ALIGN=RIGHT>2013-06-21</TD>
+   <TD ALIGN=RIGHT>2012-01-09</TD>
-   <TD>2014-12-13</TD><TD ALIGN=RIGHT>48.629%</TD>
+   <TD>2014-12-15</TD><TD ALIGN=RIGHT>48.208%</TD>
 </TR><TR>
-   <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/ 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABDC00 Microcebus<BR>murinus]</TD><TD>Mouse&nbsp;lemur</TD>
+   <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/ 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABDC00 Microcebus<BR>murinus]</TD><TD>Mouse&nbsp;lemur</TD>
    <TD>Jul.&nbsp;2007&nbsp;(Broad/micMur1)</TD>
    <TD>Broad Institute micMur1 (NCBI project 19967, ABDC00000000)</TD>
@@ Line 136: / Line 129: @@
    <TD ALIGN=RIGHT>2012-05-04</TD>
    <TD>2014-12-13</TD><TD ALIGN=RIGHT>38.087%</TD>
+</TR><TR>
+  <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD>
+  <TD>March&nbsp;2009&nbsp;(WUGSC&nbsp;3.2/calJac3)</TD>
+  <TD>WUSTL 3.2 (GCA_000004665.1)</TD>
+  <TD ALIGN=RIGHT>2010-02-05</TD>
+  <TD ALIGN=RIGHT>2013-06-21</TD>
+  <TD>2014-12-13</TD><TD ALIGN=RIGHT>48.629%</TD>
 </TR><TR>
    <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD>

TarSyr2 17-way conservation alignment: Difference between revisions

Revision as of 04:55, 20 December 2014

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