VGP Assembly gap analysis: Difference between revisions
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==VGP assembly gap annotation vs. AGP file== | |||
==Gap statistics== | |||
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Revision as of 20:54, 23 August 2019
VGP assembly gap annotation vs. AGP file
Gap statistics
| Assembly ID
UCSC browser link |
assembly
size |
sequence
count |
number
of gaps |
total
gap size |
smallest
gap |
largest
gap |
median
size |
mean
size |
common name
VGP link |
|---|---|---|---|---|---|---|---|---|---|
| GCA_003957555.2_bCalAnn1_v1.p | 1,059,706,240 | 160 | 429 | 16,096,800 | 1 | 664,828 | 100 | 37,521.7 | Anna's hummingbird |
| GCA_003957565.2_bTaeGut1_v1.p | 1,058,012,133 | 135 | 312 | 2,334,250 | 1 | 535,815 | 200 | 7,481.6 | zebra finch |
| GCA_004027225.1_bStrHab1_v1.p | 1,165,639,803 | 100 | 362 | 27,568,500 | 1 | 9,491,740 | 500 | 76,156.1 | owl parrot |
| GCA_004115265.2_mRhiFer1_v1.p | 2,075,785,400 | 135 | 158 | 7,546,100 | 1 | 833,261 | 499 | 47,760.1 | greater horseshoe bat |
| GCA_007364275.1_fArcCen1 | 932,947,025 | 189 | 744 | 16,903,500 | 1 | 1,459,710 | 100 | 22,719.7 | flier cichlid |
| GCA_007399415.1_rGopEvg1_v1.p | 2,298,564,209 | 383 | 562 | 29,560,300 | 1 | 3,059,780 | 100 | 52,598.4 | Goodes thornscrub tortoise |
| GCA_007474595.1_mLynCan4_v1.p | 2,408,900,816 | 67 | 848 | 2,778,740 | 1 | 378,177 | 100 | 3,276.8 | Canada lynx |
| GCA_900324465.2_fAnaTes1.2 | 555,641,398 | 50 | 266 | 3,606,500 | 25 | 482,892 | 100 | 13,558.3 | climbing perch |
| GCA_900324485.2_fMasArm1.2 | 591,935,101 | 122 | 238 | 13,231,300 | 2 | 607,827 | 300 | 55,593.9 | zig-zag eel |
| GCA_901699155.1_bStrTur1.1 | 1,178,928,410 | 357 | 894 | 3,876,370 | 2 | 156,350 | 100 | 4,336.0 | turtle dove |
| GCA_901709675.1_fSynAcu1.1 | 324,331,233 | 87 | 43 | 13,700 | 100 | 500 | 200 | 318.6 | greater pipefish |
| GCA_901765095.1_aMicUni1.1 | 4,685,923,413 | 1,080 | 2,452 | 47,437,300 | 1 | 2,824,530 | 100 | 19,346.4 | tiny Cayenne caecilian |
| GCF_004115215.1_mOrnAna1.p.v1 | 1,858,552,590 | 305 | 522 | 15,159,800 | 1 | 1,622,070 | 100 | 29,041.8 | platypus |
| GCF_004126475.1_mPhyDis1_v1.p | 2,117,764,065 | 141 | 831 | 22,966,500 | 1 | 1,480,060 | 500 | 27,637.1 | pale spear-nosed bat |
| GCF_900246225.1_fAstCal1.2 | 880,445,564 | 249 | 490 | 1,186,660 | 19 | 211,000 | 25 | 2,421.8 | eastern happy |
| GCF_900634415.1_fCotGob3.1 | 609,391,784 | 322 | 445 | 2,553,980 | 9 | 500,417 | 100 | 5,739.3 | channel bull blenny |
| GCF_900634625.1_fParRan2.1 | 551,012,959 | 156 | 1,523 | 10,561,500 | 1 | 153,246 | 4,304 | 6,934.7 | Indian glassy fish |
| GCF_900634775.1_fGouWil2.1 | 937,150,793 | 441 | 1,160 | 14,353,500 | 1 | 2,682,550 | 100 | 12,373.7 | blunt-snouted clingfish |
| GCF_900700375.1_fDenClu1.1 | 567,401,054 | 460 | 464 | 4,648,390 | 13 | 518,837 | 100 | 10,018.1 | denticle herring |
| GCF_900747795.1_fErpCal1.1 | 3,811,038,701 | 1,885 | 5,614 | 238,295,000 | 3 | 1,733,650 | 5,046 | 42,446.5 | reedfish |
| GCF_900963305.1_fEcheNa1.1 | 544,229,245 | 38 | 140 | 599,356 | 13 | 248,230 | 100 | 4,281.1 | live sharksucker |
| GCF_900964775.1_fSclFor1.1 | 784,563,014 | 72 | 145 | 41,360 | 13 | 14,756 | 100 | 285.2 | Asian bonytongue |
| GCF_901000725.2_fTakRub1.2 | 384,126,662 | 128 | 402 | 3,688,530 | 10 | 428,276 | 100 | 9,175.5 | torafugu |
| GCF_901001135.1_aRhiBiv1.1 | 5,319,239,201 | 1,330 | 3,573 | 33,955,800 | 4 | 771,063 | 100 | 9,503.5 | two-lined caecilian |
