Make your own virtual space: Difference between revisions
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So you want to have your own copies of the binaries and your own hgwdev-user.cse.ucsc.edu browser? Here is a walkthrough: | ===So you want to have your own copies of the binaries and your own hgwdev-user.cse.ucsc.edu browser? Here is a walkthrough:=== | ||
====Request a "virtual space" from the cluster-admins:==== | |||
This includes, among other things, adding a block to the file /usr/local/apache/conf/httpd.conf | This includes, among other things, adding a block to the file /usr/local/apache/conf/httpd.conf | ||
<VirtualHost 128.114.50.189> | <VirtualHost 128.114.50.189> | ||
ServerName hgwdev-kayla.cse.ucsc.edu | |||
ServerAlias hgwdev-kayla | |||
ScriptAlias /cgi-bin/ "/usr/local/apache/cgi-bin-kayla/" | |||
</VirtualHost> | </VirtualHost> | ||
====Populate my /usr/local/apache/cgi-bin-kayla/ directory for the first time by doing the following:==== | |||
From my home directory on hgwdev /cluster/home/kayla I type the following things: | From my home directory on hgwdev /cluster/home/kayla I type the following things: | ||
[kayla@hgwdev ~]$cd kent | [kayla@hgwdev ~]$cd kent | ||
[kayla@hgwdev ~/kent]$ cvsup | [kayla@hgwdev ~/kent]$ cvsup | ||
[kayla@hgwdev ~/kent]$ cd src | [kayla@hgwdev ~/kent]$ cd src | ||
[kayla@hgwdev src]$ make libs | [kayla@hgwdev src]$ make libs | ||
[kayla@hgwdev src]$ cd hg | [kayla@hgwdev src]$ cd hg | ||
[kayla@hgwdev hg]$ make cgi | [kayla@hgwdev hg]$ make cgi | ||
[kayla@hgwdev hg]$ cd makeDb/trackDb | [kayla@hgwdev hg]$ cd makeDb/trackDb | ||
[kayla@hgwdev trackDb]$ make update | [kayla@hgwdev trackDb]$ make update | ||
I now have my own compiled version of the cgis. | I now have my own compiled version of the cgis. | ||
====Edit my /usr/local/apache.cgi-bin-kayla/hg.conf:==== | |||
*You can copy this file from another user, but make sure to replace their name with your name in the appropriate (4) places. | |||
**Pay attention to the following lines (they will need to be edited or added): | |||
central.host=localhost | |||
central.domain=hgwdev-kayla.cse.ucsc.edu | |||
central.cookie=hguid.hgwdev-kayla | |||
backupcentral.domain=hgwdev-kayla.ucsc.edu | |||
**Also play with the line: | |||
browser.background=/images/floret.jpg to change what background your browser displays. | |||
here is a generic [image:floret.jpg] file you can download and edit. | |||
====Keep it current:==== | |||
Here is a script that you can copy and paste to make your binaries every night: | Here is a script that you can copy and paste to make your binaries every night: | ||
#!/bin/tcsh | #!/bin/tcsh | ||
if ($HOST != hgwdev) then | |||
echo "\n this must be run from hgwdev!\n" | |||
endif | |||
cd ~/kent/src | |||
make clean > dev/null | |||
cd ~/kent | |||
/cluster/bin/scripts/cvsup | mail -s 'CVS update report on kent tree' kayla | |||
cd ~/kent/src | |||
make libs | |||
cd ~/kent/src/hg | |||
make cgi | |||
cd ~/kent/src/hg/makeDb/trackDb | |||
make update | |||
====Automate it:==== | |||
Set up a cronjob: | Set up a cronjob: | ||
Revision as of 00:22, 6 December 2006
So you want to have your own copies of the binaries and your own hgwdev-user.cse.ucsc.edu browser? Here is a walkthrough:
Request a "virtual space" from the cluster-admins:
This includes, among other things, adding a block to the file /usr/local/apache/conf/httpd.conf
<VirtualHost 128.114.50.189> ServerName hgwdev-kayla.cse.ucsc.edu ServerAlias hgwdev-kayla ScriptAlias /cgi-bin/ "/usr/local/apache/cgi-bin-kayla/" </VirtualHost>
Populate my /usr/local/apache/cgi-bin-kayla/ directory for the first time by doing the following:
From my home directory on hgwdev /cluster/home/kayla I type the following things:
[kayla@hgwdev ~]$cd kent [kayla@hgwdev ~/kent]$ cvsup [kayla@hgwdev ~/kent]$ cd src [kayla@hgwdev src]$ make libs [kayla@hgwdev src]$ cd hg [kayla@hgwdev hg]$ make cgi [kayla@hgwdev hg]$ cd makeDb/trackDb [kayla@hgwdev trackDb]$ make update
I now have my own compiled version of the cgis.
Edit my /usr/local/apache.cgi-bin-kayla/hg.conf:
- You can copy this file from another user, but make sure to replace their name with your name in the appropriate (4) places.
- Pay attention to the following lines (they will need to be edited or added):
central.host=localhost central.domain=hgwdev-kayla.cse.ucsc.edu central.cookie=hguid.hgwdev-kayla backupcentral.domain=hgwdev-kayla.ucsc.edu
- Also play with the line:
browser.background=/images/floret.jpg to change what background your browser displays. here is a generic [image:floret.jpg] file you can download and edit.
Keep it current:
Here is a script that you can copy and paste to make your binaries every night:
#!/bin/tcsh if ($HOST != hgwdev) then echo "\n this must be run from hgwdev!\n" endif cd ~/kent/src make clean > dev/null cd ~/kent /cluster/bin/scripts/cvsup | mail -s 'CVS update report on kent tree' kayla cd ~/kent/src make libs cd ~/kent/src/hg make cgi cd ~/kent/src/hg/makeDb/trackDb make update
Automate it:
Set up a cronjob:
