Genome size statistics

see also

Hg18 44way alignment

statistics collected from UCSC 2bit files

• N bases == unknown bases in the assembly marked by 'N'
• non-N bases == called bases in the assembly
• total size == all bases in assembly, N and non-N
• % masked == masked either with WindowMasker or RepeatMasker plus TRF simple repeats
• % of hg18 matched (chainLink table) == featureBits hg18 chain<Db>Link == alignment coverage

do not edit, automatically generated table

order count	ucsc db name	chrom count	total size	non-N bases	N base count	% masked	common name	% of hg18 matched (chainLink table)
01	hg18	49	3,107,677,273	2,881,421,696	226,255,577	% 48.85	Human	N/A
02	panTro2	52	3,350,447,512	2,909,246,738	441,200,774	% 48.90	Chimp	94.888%
03	gorGor1	to be done
04	ponAbe2	55	3,446,771,396	3,093,543,172	353,228,224	% 50.89	Orangutan	92.892%
05	rheMac2	22	2,864,106,071	2,646,668,809	217,437,262	% 48.28	Rhesus	85.552%
06	calJac1	49,724	3,029,401,840	2,929,124,957	100,276,883	% 47.50	Marmoset	78.351%
07	tarSyr1	656,709	3,179,905,132	2,768,536,343	411,368,789	% 41.75	Tarsier	47.999%
08	otoGar1	120,882	3,420,058,864	1,969,052,059	1,451,006,805	% 34.89	Bushbaby	44.638%
09	micMur1	185,042	2,902,270,736	1,852,394,361	1,049,876,375	% 37.31	Mouse lemur	46.445%
10	tupBel1	150,851	3,660,774,957	2,137,225,476	1,523,549,481	% 20.43	TreeShrew	37.348%
11	mm9	35	2,725,765,481	2,620,345,972	105,419,509	% 44.09	Mouse	35.201%
12	rn4	45	2,834,127,293	2,566,294,765	267,832,528	% 44.29	Rat	32.893%
13	dipOrd1	210,053	2,158,502,098	1,844,961,421	313,540,677	% 28.28	Kangaroo rat	27.282%
14	cavPor3	3,144	2,723,219,641	2,663,369,733	59,849,908	% 27.53	Guinea Pig	43.971%
15	speTri1	160,889	3,488,768,592	1,913,367,893	1,575,400,699	% 26.90	Squirrel	35.828%
16	oryCun1	215,471	3,464,410,039	2,076,044,328	1,388,365,711	% 37.44	Rabbit	34.015%
17	ochPri2	187,558	3,445,784,354	1,923,624,051	1,522,160,303	% 11.44	Pika	27.974%
18	sorAra1	262,057	2,936,119,008	1,832,864,697	1,103,254,311	% 39.07	Shrew	20.056%
19	eriEur1	379,802	3,367,787,358	2,133,134,836	1,234,652,522	% 50.89	hedgehog	19.622%
20	felCat3	217,790	4,045,535,322	1,642,698,377	2,402,836,945	% 37.66	Cat	35.888%
21	canFam2	41	2,531,673,953	2,384,996,543	146,677,410	% 40.63	Dog	52.915%
22	equCab2	34	2,484,532,062	2,428,790,173	55,741,889	% 40.97	Horse	57.162%
23	pteVam1	96,944	1,996,076,410	1,839,436,660	156,639,750	% 31.75	Megabat	45.502%
24	myoLuc1	193,323	2,850,051,559	1,673,855,868	1,176,195,691	% 24.90	Microbat	33.044%
25	turTru1	116,467	2,519,048,486	2,298,444,090	220,604,396	% 43.86	Dolphin	48.537%
26	bosTau4	11,900	2,917,974,530	2,731,813,236	186,161,294	% 46.89	Cow	46.689%
27	vicPac1	298,413	2,962,253,608	1,922,910,435	1,039,343,173	% 32.24	Alpaca	39.531%
28	dasNov2	292,141	4,813,823,562	2,371,493,872	2,442,329,690	% 37.23	Armadillo	33.663%
29	choHof1	481,259	2,458,927,620	2,060,419,685	398,507,935	% 35.67	Sloth	34.463%
30	echTel1	325,491	3,823,724,728	2,111,581,369	1,712,143,359	% 13.84	Tenrec	23.645%
31	loxAfr2	225,378	4,170,414,852	2,444,975,542	1,725,439,310	% 44.13	Elephant	35.204%
32	proCap1	295,006	2,985,258,999	2,407,847,681	577,411,318	% 28.11	Rock hyrax	30.935%
33	monDom4	10	3,605,614,649	3,501,643,220	103,971,429	% 55.69	Opossum	12.385%
34	ornAna1	201,523	1,996,811,212	1,842,235,522	154,575,690	% 47.89	Platypus	7.870%
35	galGal3	57	1,100,480,441	1,042,583,135	57,897,306	% 9.85	Chicken	3.589%
36	taeGut1	70	1,233,186,341	1,222,864,691	10,321,650	% 20.42	Zebra finch	3.503%
37	anoCar1	7,233	1,781,602,899	1,741,478,929	40,123,970	% 42.56	Lizard	4.774%
38	xenTro2	19,759	1,513,925,492	1,359,400,017	154,525,475	% 19.65	X. tropicalis	2.623%
39	danRer5	5,036	1,440,582,308	1,435,595,672	4,986,636	% 49.53	Zebrafish	2.565%
40	tetNig1	27	402,240,326	312,394,419	89,845,907	% 4.34	Tetraodon	2.001%
41	fr2	2	400,525,790	351,212,245	49,313,545	% 19.01	Fugu	1.766%
42	gasAcu1	23	463,354,448	446,627,861	16,726,587	% 2.58	Stickleback	1.923%
43	oryLat2	7,189	869,000,216	700,386,597	168,613,619	% 33.09	Medaka	1.829%
44	petMar1	108,241	1,027,258,967	831,696,438	195,562,529	% 40.67	Lamprey	1.251%