Hg19 conservation alignment

see also

• Hg19 Genome size statistics
• Hg19 conservation lastz parameters
• Hg18 44way alignment
• Hg18 genome size statistics
• Hg18 44way blastz parameters

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

	UCSC db name	Scientific name	Common name	assembly date	source version	Repeat Masker	Window Masker	chain on hg19	% of hg19 matched (chainLink table)
01	hg19	Homo sapiens	Human	Feb. 2009	GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)	2009-04-24	N/A	N/A	N/A
02	panTro2	Pan troglodytes	Chimp	Mar. 2006	Washington University Build 2 Version 1	2006-03-24	N/A	2009-03-20	94.846%
03	gorGor1	Gorilla gorilla gorilla	Gorilla	Oct. 2008	Sanger Institute Oct 2008 (NCBI project 31265, CABD01000000)	2008-11-03	N/A	2009-03-22	59.484%
04	ponAbe2	Pongo pygmaeus abelii	Orangutan	July 2007	WUSTL 3.0	2007-09-15	N/A	N/A	N/A
05	rheMac2	Macaca mulatta	Rhesus	Jan. 2006	Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4	2006-01-30	N/A	N/A	N/A
06	papHam1	Papio hamadryas	Baboon	Nov. 2008	Baylor BCM HGSC Pham_1.0	2009-05-13	N/A	N/A	N/A
07	calJac1	Callithrix jacchus	Marmoset	June 2007	WUSTL 2.0.2	2007-08-23	N/A	N/A	N/A
08	otoGar1	Otolemur garnettii	Bushbaby	Dec. 2006	Broad version 1 (NCBI project 16955, AAQR00000000)	2006-12-20	N/A	N/A	N/A
09	micMur1	Microcebus murinus	Mouse lemur	Jun. 2003	Broad Institute micMur1 (NCBI project 19967, ABDC00000000)	2008-08-03	N/A	N/A	N/A
10	tupBel1	Tupaia belangeri	TreeShrew	Dec. 2006	Broad Institute tupBel1 (NCBI project 13971, AAPY01000000)	2008-10-15	N/A	N/A	N/A
11	sorAra1	Sorex araneus	Shrew	June 2006	Broad Institute sorAra1 (Draft_v2)	2008-10-20	2008-10-21	N/A	N/A
12	mm9	Mus musculus	Mouse	July 2007	NCBI Build 37	2007-07-20	N/A	2009-05-13	N/A
13	rn4	Rattus norvegicus	Rat	Nov. 2004	Baylor HGSC v. 3.4	2006-03-16	N/A	N/A	N/A
14	speTri1	Spermophilus tridecemlineatus	Squirrel	Feb. 2008	Broad Institute speTri1	2008-08-03	N/A	N/A	N/A
15	cavPor3	Cavia porcellus	Guinea Pig	Feb. 2008	Broad Institute cavPor3	2008-04-05	2008-04-08	N/A	N/A
16	oryCun1	Oryctolagus cuniculus	Rabbit	May 2005	Broad May 2005	2005-05-22	N/A	N/A	N/A
17	ochPri2	Ochotona princeps	Pika	Jul. 2008	Broad Institute ochPri2	2008-07-28	N/A	N/A	N/A
18	eriEur1	Erinaceus europaeus	Hedgehog	June 2006	Broad Institute eriEur1 (Draft_v1, NCBI project 12575)	2008-10-21	2008-10-21	N/A	N/A
19	felCat3	Felis catus	Cat	Mar. 2006	Broad Release 3	2006-10-16	N/A	N/A	N/A
20	canFam2	Canis lupus familiaris	Dog	May 2005	Broad Institute v. 2.0	2005-07-10	N/A	N/A	N/A
21	equCab2	Equus caballus	Horse	Sep. 2007	Broad Institute EquCab2	2008-04-03	N/A	N/A	N/A
22	vicPac1	Vicugna pacos	Alpaca	Jul. 2008	Broad Institute vicPac1	2008-10-17	N/A	N/A	N/A
23	pteVam1	Pteropus vampyrus	Megabat	Jul. 2008	Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)	2008-10-15	N/A	N/A	N/A
24	myoLuc1	Myotis lucifugus	Microbat	Mar. 2006	Broad Institute myoLuc1	2008-07-29	N/A	N/A	N/A
25	turTru1	Tursiops truncatus	Dolphin	Feb. 2008	Broad Institute turTru1 (NCBI project 20367, ABRN01000000)	2008-10-15	N/A	N/A	N/A
26	bosTau4	Bos taurus	Cow	Oct. 2007	Baylor Release 4.0	2008-03-10	N/A	N/A	N/A
27	choHof1	Choloepus hoffmanni	Sloth	Jul. 2008	Broad Institute choHof1	2008-10-16	N/A	N/A	N/A
28	tarSyr1	Tarsius syrichta	Tarsier	Aug. 2008	Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000)	2008-10-15	N/A	N/A	N/A
29	dipOrd1	Dipodomys ordii	Kangaroo rat	Jul. 2008	Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000)	2008-10-15	N/A	N/A	N/A
30	proCap1	Procavia capensis	Rock hyrax	Jul. 2008	Broad Institute proCap1 (NCBI project 13972, ABRQ01000000)	2008-10-16	N/A	N/A	N/A
31	macEug1	Macropus eugenii	Wallaby	Nov. 2007	Baylor Release 1.0	N/A	2008-12-26	N/A	N/A
32	dasNov1	Dasypus novemcinctus	Armadillo	May 2005	Broad May 2005	2005-05-23	N/A	N/A	N/A
33	echTel1	Echinops telfairi	Tenrec	July 2005	Broad July 2005	2005-08-04	N/A	N/A	N/A
34	loxAfr2	Loxodonta africana	Elephant	Jul. 2008	Broad Institute loxAfr2 (NCBI project 12569, AAGU02000000)	2008-10-07	N/A	N/A	N/A
35	dasNov2	Dasypus novemcinctus	Armadillo	Jul. 2008	Broad Institute dasNov2 (NCBI project 12594, AAGV020000000)	2008-10-07	N/A	N/A	N/A
36	monDom5	Monodelphis domestica	Opossum	Oct. 2006	Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)	2008-11-26	2008-12-02	N/A	N/A
37	ornAna1	Ornithorhynchus anatinus	Platypus	Mar. 2007	WUSTL version 5.0.1	2007-07-20	N/A	N/A	N/A
38	galGal3	Gallus gallus	Chicken	May 2006	Chicken Genome Sequencing Consortium May 2006 release	2006-05-18	2007-01-02	N/A	N/A
39	taeGut1	Taeniopygia guttata	Zebra finch	Jul. 2008	Washington University taeGut1	2009-02-04	2008-08-05	N/A	N/A
40	anoCar1	Anolis carolinensis	Lizard	Feb. 2007	Broad Institute AnoCar (1.0)	2007-03-07	2007-02-16	N/A	N/A
41	xenTro2	Xenopus tropicalis	X. tropicalis	Aug. 2005	JGI v4.1	2006-04-17	2007-02-20	N/A	N/A
42	danRer5	Danio rerio	Zebrafish	July 2007	Wellcome Trust Sanger Institute, Zv7 assembly	2007-09-05	N/A	N/A	N/A
43	tetNig1	Tetraodon nigroviridis	Tetraodon	Feb. 2004	Genoscope and Broad Institute V7 (NCBI project 12350, CAAE01000000)	2004-08-17	2006-12-05	N/A	N/A
44	fr2	Takifugu rubripes	Fugu	Oct. 2004	JGI V4.0	2007-03-07	2007-01-22	N/A	N/A
45	gasAcu1	Gasterosteus aculeatus	Stickleback	Feb. 2006	Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)	2006-10-17	2006-12-05	N/A	N/A
46	oryLat2	Oryzias latipes	Medaka	Oct. 2005	NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000)	2008-08-12	2008-08-14	N/A	N/A
47	petMar1	Petromyzon marinus	Lamprey	Mar. 2007	WUSTL v.3.0 (March 2007)	N/A	2008-01-28	N/A	N/A