Hg19 Andy's alignment notes: Difference between revisions
From genomewiki
Jump to navigationJump to search
mNo edit summary |
No edit summary |
||
| Line 17: | Line 17: | ||
| 10M | | 10M | ||
| 100 | | 100 | ||
| | | done (2009-05-20) | ||
|- | |- | ||
| Cat | | Cat | ||
| Line 25: | Line 25: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | done (2009-05-20) | ||
|- | |- | ||
| Guinea Pig | | Guinea Pig | ||
| Line 33: | Line 33: | ||
| 10M | | 10M | ||
| 100 | | 100 | ||
| trying to load manually (2009-05- | | trying to load manually (2009-05-22) | ||
|- | |- | ||
| Cow | | Cow | ||
| Line 41: | Line 41: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | done (2009-05-22) | ||
|- | |- | ||
| Megabat | | Megabat | ||
| Line 49: | Line 49: | ||
| 10M | | 10M | ||
| 200 | | 200 | ||
| | | done (2009-05-22) | ||
|- | |- | ||
| Horse | | Horse | ||
| Line 57: | Line 57: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | 'chainMerge' step running (2009-05-22) | ||
|- | |- | ||
| Alpaca | | Alpaca | ||
| Line 65: | Line 65: | ||
| 10M | | 10M | ||
| 100 | | 100 | ||
| | | 'blastz' failed on swarm like microbat (2009-05-22) | ||
|- | |- | ||
| Microbat | | Microbat | ||
| Line 73: | Line 73: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| 'blastz' | | 'blastz' failed again on pk (2009-05-22) | ||
|- | |- | ||
| Dolphin | | Dolphin | ||
| Line 81: | Line 81: | ||
| 10M | | 10M | ||
| 200 | | 200 | ||
| 'blastz' | | 'blastz' failed on pk (2009-05-22) | ||
|- | |- | ||
| Sloth | | Sloth | ||
| Line 89: | Line 89: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| 'blastz' | | 'blastz' failed on swarm similar to microbat (2009-05-22) | ||
|} | |} | ||
Revision as of 23:55, 22 May 2009
- everything run with -noLoadChainSplit -chainMinScore=3000 -chainLinearGap=medium
| Species | Database | Started | SEQ1_CHUNK | SEQ2_CHUNK | SEQ2_LIMIT | Status |
|---|---|---|---|---|---|---|
| Squirrel | speTri1 | 2009-05-14 | 10M | 10M | 100 | done (2009-05-20) |
| Cat | felCat3 | 2009-05-14 | 10M | 10M | 300 | done (2009-05-20) |
| Guinea Pig | cavPor3 | 2009-05-14 | 10M | 10M | 100 | trying to load manually (2009-05-22) |
| Cow | bosTau4 | 2009-05-21 | 10M | 10M | 300 | done (2009-05-22) |
| Megabat | pteVam1 | 2009-05-21 | 10M | 10M | 200 | done (2009-05-22) |
| Horse | equCab2 | 2009-05-21 | 10M | 10M | 300 | 'chainMerge' step running (2009-05-22) |
| Alpaca | vicPac1 | 2009-05-21 | 10M | 10M | 100 | 'blastz' failed on swarm like microbat (2009-05-22) |
| Microbat | myoLuc1 | 2009-05-21 | 20M | 10M | 300 | 'blastz' failed again on pk (2009-05-22) |
| Dolphin | turTru1 | 2009-05-21 | 10M | 10M | 200 | 'blastz' failed on pk (2009-05-22) |
| Sloth | choHof1 | 2009-05-21 | 20M | 10M | 300 | 'blastz' failed on swarm similar to microbat (2009-05-22) |
