Hg19 Andy's alignment notes: Difference between revisions
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| Line 17: | Line 17: | ||
| 10M | | 10M | ||
| 100 | | 100 | ||
| | | needs recip best (2009-05-28) | ||
|- | |- | ||
| Cat | | Cat | ||
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| 10M | | 10M | ||
| 300 | | 300 | ||
| | | needs recip best (2009-05-28) | ||
|- | |- | ||
| Guinea Pig | | Guinea Pig | ||
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| 10M | | 10M | ||
| 300 | | 300 | ||
| | | needs recip best (2009-05-28) | ||
|- | |- | ||
| Megabat | | Megabat | ||
| Line 49: | Line 49: | ||
| 10M | | 10M | ||
| 200 | | 200 | ||
| | | needs recip best (2009-05-28) | ||
|- | |- | ||
| Horse | | Horse | ||
| Line 57: | Line 57: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | needs syntenic nets (2009-05-28) | ||
|- | |- | ||
| Alpaca | | Alpaca | ||
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| 10M | | 10M | ||
| 300 | | 300 | ||
| | | needs recip best (2009-05-28) | ||
|} | |} | ||
Revision as of 18:44, 28 May 2009
- everything run with -noLoadChainSplit -chainMinScore=3000 -chainLinearGap=medium
| Species | Database | Started | SEQ1_CHUNK | SEQ2_CHUNK | SEQ2_LIMIT | Status |
|---|---|---|---|---|---|---|
| Squirrel | speTri1 | 2009-05-14 | 10M | 10M | 100 | needs recip best (2009-05-28) |
| Cat | felCat3 | 2009-05-14 | 10M | 10M | 300 | needs recip best (2009-05-28) |
| Guinea Pig | cavPor3 | 2009-05-14 | 10M | 10M | 100 | trying to load manually (2009-05-22) |
| Cow | bosTau4 | 2009-05-21 | 10M | 10M | 300 | needs recip best (2009-05-28) |
| Megabat | pteVam1 | 2009-05-21 | 10M | 10M | 200 | needs recip best (2009-05-28) |
| Horse | equCab2 | 2009-05-21 | 10M | 10M | 300 | needs syntenic nets (2009-05-28) |
| Alpaca | vicPac1 | 2009-05-21 | 10M | 10M | 100 | 'blastz' failed on swarm like microbat (2009-05-22) |
| Microbat | myoLuc1 | 2009-05-21 | 20M | 10M | 300 | 'blastz' failed again on pk (2009-05-22) |
| Dolphin | turTru1 | 2009-05-21 | 10M | 10M | 200 | 'blastz' failed on pk (2009-05-22) |
| Sloth | choHof1 | 2009-05-21 | 20M | 10M | 300 | needs recip best (2009-05-28) |
