Hg19 Andy's alignment notes: Difference between revisions
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| Line 41: | Line 41: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | needs swap (2009-06-03) | ||
|- | |- | ||
| Megabat | | Megabat | ||
| Line 65: | Line 65: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | done (2009-06-03) | ||
|- | |- | ||
| Microbat | | Microbat | ||
| Line 73: | Line 73: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | done (2009-06-03) | ||
|- | |- | ||
| Dolphin | | Dolphin | ||
| Line 81: | Line 81: | ||
| 10M | | 10M | ||
| 200 | | 200 | ||
| | | done (2009-06-03) | ||
|- | |- | ||
| Sloth | | Sloth | ||
| Line 89: | Line 89: | ||
| 10M | | 10M | ||
| 300 | | 300 | ||
| | | done (2009-06-03) | ||
|- | |- | ||
| Wallaby | | Wallaby | ||
| Line 97: | Line 97: | ||
| 20M | | 20M | ||
| 200 | | 200 | ||
| | | done (2009-06-03) | ||
|} | |} | ||
Revision as of 10:06, 3 June 2009
- everything run with -noLoadChainSplit -chainMinScore=3000 -chainLinearGap=medium
| Species | Database | Started | SEQ1_CHUNK | SEQ2_CHUNK | SEQ2_LIMIT | Status |
|---|---|---|---|---|---|---|
| Squirrel | speTri1 | 2009-05-14 | 10M | 10M | 100 | done (2009-05-31) |
| Cat | felCat3 | 2009-05-14 | 10M | 10M | 300 | needs swap (2009-06-02) |
| Guinea Pig | cavPor3 | 2009-05-14 | 10M | 10M | 100 | needs swap (2009-06-02) |
| Cow | bosTau4 | 2009-05-21 | 10M | 10M | 300 | needs swap (2009-06-03) |
| Megabat | pteVam1 | 2009-05-21 | 10M | 10M | 200 | done (2009-06-01) |
| Horse | equCab2 | 2009-05-21 | 10M | 10M | 300 | needs swap (2009-06-02) |
| Alpaca | vicPac1 | 2009-05-21 | 20M | 10M | 300 | done (2009-06-03) |
| Microbat | myoLuc1 | 2009-05-21 | 20M | 10M | 300 | done (2009-06-03) |
| Dolphin | turTru1 | 2009-05-21 | 10M | 10M | 200 | done (2009-06-03) |
| Sloth | choHof1 | 2009-05-21 | 20M | 10M | 300 | done (2009-06-03) |
| Wallaby | macEug1 | 2009-05-21 | 20M | 20M | 200 | done (2009-06-03) |
