Hg18 44way alignment
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see also
sanity
The table below needs to be examined for sanity. The "chain on hg18" date should be after the masking date. Some of these existing pair-wise alignments need to be re-done since the genomes have been properly repeat masked. When all the chain tables exist, that is a good sign that the multiple alignment can be done.
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| UCSC db name |
Scientific name |
Common name |
assembly date |
source version |
RepeatMasker | WindowMasker | chain on hg18 |
|
|---|---|---|---|---|---|---|---|---|
| 01 | hg18 | Homo sapiens |
Human | Mar. 2006 | NCBI Build 36.1 | 2005-12-09 | 2006-12-05 | N/A |
| 02 | panTro2 | Pan troglodytes |
Chimp | Mar. 2006 | Washington University Build 2 Version 1 | 2006-03-24 | N/A | 2006-07-15 |
| 03 | gorGor1 | N/A | N/A | N/A | N/A | N/A | N/A | N/A |
| 04 | ponAbe2 | Pongo pygmaeus abelii |
Orangutan | July 2007 | WUSTL 3.0 | 2007-09-15 | N/A | 2007-10-03 |
| 05 | rheMac2 | Macaca mulatta |
Rhesus | Jan. 2006 | Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 | 2006-01-30 | N/A | 2006-03-17 |
| 06 | calJac1 | Callithrix jacchus |
Marmoset | June 2007 | WUSTL 2.0.2 | 2007-08-23 | N/A | 2007-11-13 |
| 07 | tarSyr1 | Tarsier syrichta |
Tarsier | Aug. 2008 | Broad Institute tarSyr1 | 2008-10-15 | N/A | 2008-07-28 |
| 08 | otoGar1 | Otolemur garnettii |
Bushbaby | Dec. 2006 | Broad version 1 | 2006-12-20 | N/A | 2007-02-27 |
| 09 | micMur1 | Microcebus murinus |
Mouse lemur | Jun. 2003 | Broad Institute micMur1 | 2008-08-03 | N/A | 2008-08-04 |
| 10 | tupBel1 | Tupaia belangeri |
TreeShrew | Dec. 2006 | Broad version 1 | 2008-10-15 | N/A | 2006-12-20 |
| 11 | mm9 | Mus musculus |
Mouse | July 2007 | NCBI Build 37 | 2007-07-20 | N/A | 2007-08-14 |
| 12 | rn4 | Rattus norvegicus |
Rat | Nov. 2004 | Baylor HGSC v. 3.4 | 2006-03-16 | N/A | 2006-02-17 |
| 13 | dipOrd1 | Dipodomys ordii |
Kangaroo rat | Jul. 2008 | Broad Institute | 2008-10-15 | N/A | 2008-07-28 |
| 14 | cavPor3 | Cavia porcellus |
Guinea Pig | Feb. 2008 | Broad Institute cavPor3 | 2008-04-05 | 2008-04-08 | 2008-04-11 |
| 15 | speTri1 | Spermophilus tridecemlineatus |
Squirrel | Feb. 2008 | Broad Institute speTri1 | 2008-08-03 | N/A | 2008-08-05 |
| 16 | oryCun1 | Oryctolagus cuniculus |
Rabbit | May 2005 | Broad May 2005 | 2005-05-22 | N/A | 2007-04-17 |
| 17 | ochPri2 | Ochotona princeps |
Pika | Jul. 2008 | Broad Institute ochPri2 | 2008-07-28 | N/A | 2008-07-30 |
| 18 | sorAra1 | Sorex araneus |
Shrew | June 2006 | Broad Institute sorAra (Draft_v2) | N/A | N/A | 2007-03-10 |
| 19 | eriEur1 | Erinaceus europaeus |
Hedgehog | June 2006 | Broad Institute eriEur1 (Draft_v1) | N/A | N/A | 2007-03-11 |
| 20 | felCat3 | Felis catus |
Cat | Mar. 2006 | Broad Release 3 | 2006-10-16 | N/A | 2006-11-10 |
| 21 | canFam2 | Canis lupus familiaris |
Dog | May 2005 | Broad Institute v. 2.0 | 2005-07-10 | N/A | 2005-12-29 |
| 22 | equCab2 | Equus caballus |
Horse | Sep. 2007 | Broad Institute EquCab2 | 2008-04-03 | N/A | 2008-04-11 |
| 23 | pteVam1 | Pteropus vampyrus |
Megabat | Jul. 2008 | Broad Institute pteVam1 | 2008-10-15 | N/A | 2008-07-13 |
| 24 | myoLuc1 | Myotis lucifugus |
Microbat | Mar. 2006 | Broad Institute myoLuc1 | 2008-07-29 | N/A | 2008-08-02 |
| 25 | turTru1 | Tursiops truncatus |
Dolphin | Feb. 2008 | Broad Institute turTru1 | 2008-10-15 | N/A | 2008-07-12 |
| 26 | bosTau4 | Bos taurus |
Cow | Oct. 2007 | Baylor Release 4.0 | 2008-03-10 | N/A | 2008-03-11 |
| 27 | vicPac1 | Vicugna vicugna |
Alpaca | Jul. 2008 | Broad Institute vicPac1 | N/A | N/A | N/A |
| 28 | dasNov2 | Dasypus novemcinctus |
Armadillo | Jul. 2008 | Broad Institute dasNov2 | 2008-10-07 | N/A | 2008-08-03 |
| 29 | choHof1 | Choloepus hoffmanni |
Sloth | Jul. 2008 | Broad Institute choHof1 | 2008-10-16 | N/A | 2008-08-05 |
| 30 | echTel1 | Echinops telfairi |
Tenrec | July 2005 | Broad July 2005 | 2005-08-04 | N/A | 2007-04-17 |
| 31 | loxAfr2 | Loxodonta africana |
Elephant | Jul. 2008 | Broad Institute loxAfr2 | 2008-10-07 | N/A | 2008-08-02 |
| 32 | proCap1 | Procavia capensis |
Rock hyrax | Jul. 2008 | Broad Institute proCap1 | 2008-10-16 | N/A | 2008-08-01 |
| 33 | monDom4 | Monodelphis domestica |
Opossum | Jan. 2006 | Broad Inst. monDom4 Jan06 | 2006-02-10 | N/A | 2006-02-13 |
| 34 | ornAna1 | Ornithorhynchus anatinus |
Platypus | Mar. 2007 | WUSTL version 5.0.1 | 2007-07-20 | N/A | 2007-04-04 |
| 35 | galGal3 | Gallus gallus |
Chicken | May 2006 | Chicken Genome Sequencing Consortium May 2006 release | 2006-05-18 | 2007-01-02 | 2006-05-23 |
| 36 | taeGut1 | Taeniopygia guttata |
Zebra finch | Jul. 2008 | Washington University taeGut1 | N/A | 2008-08-05 | 2008-09-09 |
| 37 | anoCar1 | Anolis carolinensis |
Lizard | Feb. 2007 | Broad Institute AnoCar (1.0) | 2007-03-07 | 2007-02-16 | 2007-02-18 |
| 38 | xenTro2 | Xenopus tropicalis |
X. tropicalis | Aug. 2005 | JGI v4.1 | 2006-04-17 | 2007-02-20 | 2006-04-20 |
| 39 | danRer5 | Danio rerio |
Zebrafish | July 2007 | Wellcome Trust Sanger Institute, Zv7 assembly | 2007-09-05 | N/A | 2007-10-17 |
| 40 | tetNig1 | Tetraodon nigroviridis |
Tetraodon | Feb. 2004 | Genoscope and Broad Institute, V7 | 2004-08-17 | 2006-12-05 | 2006-01-07 |
| 41 | fr2 | Takifugu rubripes |
Fugu | Oct. 2004 | JGI V4.0 | 2007-03-07 | 2007-01-22 | 2007-01-24 |
| 42 | gasAcu1 | Gasterosteus aculeatus |
Stickleback | Feb. 2006 | Broad Institute gasAcu1 (1.0) | 2006-10-17 | 2006-12-05 | 2007-02-08 |
| 43 | oryLat2 | Oryzias latipes |
Medaka | Oct. 2005 | MEDAKA1 | 2008-08-12 | 2008-08-14 | 2008-08-19 |
| 44 | petMar1 | Petromyzon marinus |
Lamprey | Mar. 2007 | WUSTL v.3.0 (March 2007) | N/A | 2008-01-28 | 2008-01-29 |
