Same species lift over construction

From genomewiki
Revision as of 05:45, 13 March 2013 by Hiram (talk | contribs) (adding step 2 chain/net)
Jump to navigationJump to search

Same Species Lift Over

Same species lift over procedure. There is a different procedure for different species lift over construction: Minimal_Steps_For_LiftOver

Step 1 - blat

Decide on a workDirectory where all this is to be performed. Note the script: File:SameSpeciesBlatSetup.sh.txt and the comments in it to setup the workDirectory and your two genome sequences. That script also uses File:BlatJob.csh.txt

Step 2 - chain/net

The second step is encapsulated in the script: File:SameSpeciesChainNet.sh.txt Similar setup as for Step 1, working in the run.chain directory, constructs the result file. Read the script for information on how to use it and where the result is.

Retrieved from "https://genomewiki.ucsc.edu/index.php?title=Same_species_lift_over_construction&oldid=20960"