GapOverlap

BUGS

There is something wrong with the median calculation. It is not correct.

methods

The measurements are taken from the gapOverlap.bed[.gz] file in /hive/data/genomes/<db>/bed/gapOverlap/gapOverlap.bed[.gz] The score column in the bed file (column 5) is the size of the duplicated sequence. The gap size between the duplicated sequence is calculated from: end - start + 2 * score

The item total is the sum of the sizes of the duplicated sequences. Not both sides though, just one side. This indicates how much sequence is duplicated.

The gap total is the sum of the sizes of all the gaps involved.

table features

The table columns can be sorted, click on the up/down arrow icon in the column header. The 'year' is what we have in the dbDb table as indicated from the assembly information files for the date of the assembly. A few do not have dates (set to 1880), and do not have database genome browsers

These ends were found by taking 1,000 bases on each side of any run of N's in the sequence, thus any gap, and aligned with the blat command:

 blat -q=dna -minIdentity=95 -repMatch=10 upstream.fa downstream.fa

Filtering the PSL output for a perfect match, no mis-matches, and therefore of equal size matching sequence, where the alignment ends exactly at the end of the upstream sequence before the gap and begins exactly at the start of the downstream sequence after the gap.

gapOverlap table statistics

count	year	dbName	item count	item median	item total		gap median	gap total	example item
001	2013	CHM1	85	86	10897		88	65164	319 10 chr6:108876987-108877634
002	2014	acaChl1	5	17	1250		188	2340	722 188 KK833582:5976-7607
005	2009	ailMel1	48	104	10594		1193	82504	75 1 GL192694.1:348745-348895
006	2012	allMis1	1151	83	273934		1	74939	999 1 JH739280:136433-138431
007	2013	allSin1	95	125	26114		2265	261774	69 10 KE696011:2095494-2095641
008	2013	amaVit1	10099	81	1392334		172	2756641	492 13 KB238901:2710-3706
009	2013	anaPla1	31	251	10663		166	94318	99 1 KB742632:907264-907462
010	2014	ancCey1	805	154	171926		1	85569	981 1 JARK01000206v1:43215-45177
011	2014	angJap1	4539	91	477038		1	610535	588 1 KI304555:142639-143815
012	2007	anoCar1	20	383.5	8167		537.5	23338	965 100 scaffold_84:3853690-3855719
013	2010	anoCar2	25	24	6694		258	26105	318 100 chr4:54548520-54549255
014	2003	anoGam1	7	528	3139		1	21041	1000 384 chr2L:5019927-5022310
015	2013	apaSpi1	607	61	34340		1	56961	86 10 KB929338:2579176-2579357
017	2004	apiMel1	216	5	12150		1	24454	64 1 Group14.17:517485-517613
018	2005	apiMel2	133	5	7371		5	19757	168 50 Group4:4855105-4855490
019	2005	apiMel3	199	62	16045		5	27354	198 50 Group15:1672512-1672957
020	2010	apiMel4	226	52.5	13378		5	24561	167 50 Group14:1674117-1674500
021	2008	aplCal1	25	77	3383		1	16863	390 100 scaffold_1802:24095-24974
022	2014	aptFor1	109	147	26798		1575	323838	779 98 KL225582:135043-136698
023	2015	aptMan1	15742	124	4653010		1	3331011	1000 1 NW_013987125v1:2508272-2510272
024	2014	aquChr1	4592	43	201248		65	16118238	65 1 KK850461:8872-9002
025	2014	aquChr2	326	82.5	31349		1	143600	1000 1 KN265664v1:16826772-16828772
026	2013	araMac1	120	48.5	7929		33	27135	241 2 KE047968:4314-4797
027	1880	araTha1	1	289	289		6	60	289 60 chr3:13855281-13855918
028	2012	ascSuu1	9	404	3688		555	6481	1000 247 JH879107v1:69728-71974
029	2013	astMex1	1385	78	137888		1	1964877	647 1 KB872443:19678-20972
030	2013	balAcu1	211	149	57860		821	371511	926 15 KI537556:2252563-2254429
031	2014	balPav1	5	27	1303		216	1098	391 46 KL482982:8685-9512
032	2014	bisBis1	8184	72	712109		1	947641	933 100 KN265089v1:519297-521262
034	2011	bosMut1	139	83	27917		1274	256420	71 14 JH880933:479978-480133
035	2004	bosTau1	6550	4	289123		5	609155	200 50 SCAFFOLD51732:9156-9605
036	2005	bosTau2	4361	105	564259		5	2525381	997 50 scaffold4383:34413-36456
037	2006	bosTau3	411	51	38673		5	270212	1000 50 chr10:68862764-68864813
038	2007	bosTau4	437	53	52814		5	376407	1000 50 chr10:75537624-75539673
039	2009	bosTau5	435	53	51742		5	376650	1000 50 chr10:75464684-75466733
040	2009	bosTau6	789	67	463109		1	87080	923 1 chr22:31476636-31478482
041	2011	bosTau7	413	55	39706		5	141131	1000 50 chr10:75201034-75203083
042	2014	bosTau8	789	67	463109		1	87080	923 1 chr22:31476636-31478482
043	2009	bosTauMd3	789	67	463109		1	87080	923 1 chr22:31476636-31478482
044	2006	braFlo1	31	484	14260		417	12668	375 1 chrUn:879323570-879324320
045	2008	braFlo2	22	439	8529		411	9064	36 1 Bf_V2_248:1229532-1229604
046	1880	braRap1	12	104	3193		281	47557	587 472 chrUn_JH977260:73788-75433
047	2007	bruMal1	55	5	6093		1	18780	87 1 Bmal_supercontig14387:293-467
048	2014	bruMal2	46	124.5	12221		431.5	63506	1000 20 Bmal_v3_scaffold83:22898-24917
049	2013	bubBub1	2383	163	395268		1	251657	990 100 KI418684:2409965-2412044
050	2014	bucRhi1	31	114	5089		78	3263	327 10 KL526600:8925-9588
052	2011	burXyl1	65	601	33110		301	19553	977 300 scaffold00460:102617-104870
053	2010	caeAng1	414	41	16726		2	1802	46 2 scafRNAPATH105:2285-2378
054	2012	caeAng2	461	46	19505		2	1495	46 2 Cang_2012_03_13_00008:384957-385050
055	2008	caeJap1	135	58	10431		186	27893	687 10 chrUn:37794313-37795696
056	2009	caeJap2	765	103	130030		1018	891958	707 10 chrUn:150512438-150513861
057	1880	caeJap2a	764	103	129273		1018	890958	707 10 Cjap_Contig4853:3969-5392
059	2010	caeJap4	16	98.5	3188		2	1468	1000 20 Scaffold17129:65445-67464
060	2007	caePb1	115	44	9160		164	37674	476 10 chrUn:52430125-52431086
061	2008	caePb2	83	37	3814		222	63681	230 10 chrUn:74484521-74484990
062	2010	caePb3	89	37	4915		222	74680	230 10 Scfld02_75:384084-384553
063	2005	caeRem1	58	96	10213		133.5	11238	678 10 SuperCont3:723391-724756
064	2006	caeRem2	58	96	10213		133.5	11238	678 10 chrUn:13919319-13920684
065	2007	caeRem3	46	5	5760		197.5	14178	460 10 chrUn:27560772-27561701
066	2007	caeRem4	46	5	5760		197.5	14178	460 10 Crem_Contig253:25277-26206
067	2010	caeSp111	4	194.5	760		2	80	333 20 Scaffold629:32984714-32985399
068	2012	caeSp51	14	34	730		12.5	894	201 3 Csp5_scaffold_09411:792-1196
069	2010	caeSp71	535	47	30250		213	312209	162 20 Scaffold11:29462-29805
070	2010	caeSp91	26	217.5	7172		8745	180575	1000 20 Scaffold7498:303469-305488
071	2014	calAnn1	89	127	16337		1006	168943	440 38 KL218155:301090-302007
072	2007	calJac1	1597	42	129367		182	377725	937 10 Contig4771:110891-112774
073	2009	calJac3	1516	43	116646		183.5	452860	807 10 chr3:111956760-111958383
074	2013	calMil1	31	123	8335		1	70257	1000 100 KI635945:3331497-3333596
075	2011	camFer1	11	205	2059		129	2031	237 2 KB018701:319294-319769
076	2004	canFam1	12	153	2669		210.5	8118	104 1 chr18:45376349-45376557
077	2005	canFam2	32	199.5	8095		1	5245	746 1 chrUn:76334072-76335564
078	2011	canFam3	34	175.5	8234		1	4545	746 10 chrUn_JH374132:3424-4925
081	2014	capCar1	4	105	618		48	354	139 26 KL359104:23556-23859
082	2012	capHir1	627	41	71810		1	546475	988 16 chr16:40339512-40341503
083	2014	carCri1	4	161	644		210.5	878	52 13 KK509558:67998-68114
084	2005	cavPor2	393	427	164744		1	166667	986 100 scaffold_291164:123135-125206
085	2008	cavPor3	3	145	552		1	961	313 100 scaffold_799:9280-10005
086	2002	cb1	81	163	20408		145	39126	645 10 chrUn:51532611-51533910
087	2005	cb2	86	153	21033		163.5	42461	645 10 chrI:9244132-9245431
088	2007	cb3	80	148.5	19176		166.5	39580	645 10 chrI:9355978-9357277
089	2011	cb4	86	153	20969		151.5	40114	645 10 chrI:11247250-11248549
100	2012	cerSim1	1818	68	129697		1	270005	815 100 JH767775:6384924-6386653
101	2014	chaVoc1	47	2	13700		1514	133699	780 257 KL409415:13594818-13596634
102	2014	chaVoc2	47	2	13700		1514	133699	780 257 KL873469:13594818-13596634
103	2013	cheMyd1	129	204	37111		798	277853	314 27 KB535131:1778822-1779476
104	2012	chiLan1	1183	7	101029		1	267937	996 100 JH721987:2542897-2544988
105	2013	chlSab1	23634	81	2123928		1	396229	923 1 chrX:117110178-117112024
106	2014	chlSab2	23631	81	2123656		1	396199	923 1 chrX:117110178-117112024
107	2014	chlUnd1	5	293	1223		129	617	310 65 KK747264:28313-28997
108	2008	choHof1	104	54.5	14520		145.5	33892	986 100 scaffold_56240:3133-5204
109	2012	chrAsi1	3416	76	339291		1	720504	991 100 JH823765:402000-404081
110	2011	chrPic1	7555	79	738667		5	1230115	64 1 JH584466:5301285-5301413
111	2014	chrPic2	6315	77	629230		206	2593694	1000 10 chrUn_KK083066v1:1300793-1302802
112	2002	ci1	28	311.5	8955		5	11060	833 50 Scaffold_7:289989-291704
113	2005	ci2	2	472.5	945		173	346	843 296 scaffold_403:40134-42115
114	2011	ci3	22	258.5	6455		5	9493	597 50 chrUn_NW_004190451v1:5050-6293
115	2003	cioSav1	8	124	1554		1	2755	296 100 ps_146:263977-264668
116	2005	cioSav2	6	402.5	2394		2	1668	636 10 reftig_72:2536022-2537303
117	2015	colAng1	5690	77	626146		5	1472786	996 50 NW_012119888v1:35718-37759
118	2013	colLiv1	19	116	3824		129	32865	33 57 KB379196:2050-2172
119	2014	colStr1	5	161	910		308	1203	362 113 KK530485:3407-4243
120	2012	conCri1	1110	72	108033		1	233431	924 100 JH655880:49229854-49231801
121	2014	corBra1	41	9	7520		1445	112176	259 28 KK718436:193091-193636
122	2014	corCor1	21	81	2189		1027	27602	81 1 KL997637:955359-955521
123	2013	cotJap1	1122	33	38101		68	67651	214 1 DF262918:84572-85000
124	2013	criGri1	588	217	196516		1481.5	1359815	422 10 KE379019:554914-555767
125	2011	criGriChoV1	213	162	53736		1526	472877	369 10 NW_003615838v1:158557-159304
126	2014	cucCan1	113	242	41656		972	203191	961 69 KL448150:311854-313844
127	2014	cynSem1	78	311.5	27891		935.5	165198	568 38 chr11:13981930-13983103
128	2014	cypVar1	3240	89	423504		1	2210432	1000 1 KL653732:89449-91449
129	2003	danRer1	1280	57	186413		1	322061	1000 10 chr25:16217228-16219237
130	2014	danRer10	575	174	105525		1	17550	484 10 chr5:1032421-1033398
131	2004	danRer2	1150	58	191859		1	223764	1000 10 chr10:26174984-26176993
132	2005	danRer3	819	58	88143		1	121196	776 10 chrUn:112388525-112390086
133	2006	danRer4	726	65.5	121967		14	135012	705 11 chr25:30060270-30061690
134	2007	danRer5	1559	17	288298		1	155702	73 1 chr21:35548773-35548919
135	2008	danRer6	1421	133	225674		1	142101	1000 100 Zv8_scaffold431:54613-56712
136	2010	danRer7	1245	164	217595		1	124500	900 100 chr22:2241720-2243619
137	2005	dasNov1	55	123	12971		111	31368	681 100 scaffold_3005:3743-5204
138	2008	dasNov2	109	136	25865		1	58752	836 100 scaffold_3394:70496-72267
139	2011	dasNov3	239	46	16270		5	94236	677 50 JH564516:24848-26251
140	2014	dicLab1	275	423	116519		203	134149	994 20 HG916850:2956140-2958147
141	2008	dipOrd1	219	46	46012		379	102683	1000 100 scaffold_2463:9467-11566
142	2013	dirImm1	505	175	132528		2	32073	999 1 nDi_2_2_scaf00035:47420-49418
143	2003	dm1	9	252	2984		2	1237	604 20 chrU:5250525-5251752
144	2004	dm2	8	362	2818		2	1217	604 20 chrU:5250525-5251752
145	2006	dm3	20	286	4907		1	423940	276 20 chrU:4943122-4943693
146	2014	dm6	15	333	4828		1	1340	276 20 chrUn_DS483709v1:12934-13505
147	2003	dp2	113	64	11633		1	9049	784 10 Contig4969_Contig4496:202614-204191
148	2004	dp3	136	79.5	17354		79.5	14988	485 11 chrU:7044759-7045739
149	2006	dp4	183	81	19720		5	18528	798 50 chrXL_group1e:8376310-8377955
150	2012	droAlb1	4360	3	131320		22	152454	76 1 JH853217:889-1041
151	2004	droAna1	103	252	28853		1	10300	943 100 2448822:95133-97118
152	2005	droAna2	32	16	7905		701	72786	791 25 scaffold_13266:420335-421941
153	2006	droAna3	35	143	8663		671	75001	707 25 scaffold_13230:483470-484908
154	2013	droBia2	14	116.5	2103		2	294	447 20 KB462730:148150-149063
155	2013	droBip2	26	103.5	3925		2	520	409 20 KB464242:790791-791628
156	2013	droEle2	22	205	4879		2	440	480 20 KB458480:1051747-1052726
157	2005	droEre1	8	86.5	1545		731	6855	773 25 scaffold_4784:23686196-23687766
158	2006	droEre2	14	221	4384		239	7433	763 25 scaffold_4784:18133045-18134595
159	2013	droEug2	17	52	1627		2	237	72 1 AFPQ02002129:815-959
160	2013	droFic2	11	352	3277		2	220	424 20 KB457328:1582-2449
161	2005	droGri1	17	76	2908		444	11143	734 312 scaffold_24659:1579-3358
162	2006	droGri2	48	60.5	5904		430.5	52107	774 25 scaffold_15245:16809148-16810720
163	2013	droKik2	12	102	1812		2	1721	361 20 KB458730:24774-25515
164	2013	droMir2	122	72	16465		1	57520	1000 10 chr2:9770771-9772780
166	2005	droMoj2	22	219.5	7748		366.5	30847	969 25 scaffold_6496:4573125-4575087
167	2006	droMoj3	16	343	6118		426	29359	859 25 scaffold_6496:14181729-14183471
168	2005	droPer1	28	402	10502		1	10914	937 100 super_12:105769-107742
169	2013	droPse3	12	51	1309		86	3307	718 50 chr3:13529933-13531418
170	2013	droRho2	35	167	7228		2	1286	454 20 KB451407:7018-7945
171	2005	droSec1	17	399	6822		1	5318	765 100 super_59:77146-78775
172	2005	droSim1	109	106	23001		298	40703	801 10 chr2L:4623692-4625303
173	2014	droSim2	104	58	5999		1	1818	359 8 chr2R:7425888-7426613
174	2013	droSuz1	71	185	16489		1565	196054	364 76 KI420423:11753-12556
175	2013	droTak2	13	102	2070		2	260	472 20 KB461286:709634-710597
176	2004	droVir1	48	328.5	15839		25	16648	698 25 scaffold_10:2740496-2741916
177	2005	droVir2	13	232	3421		1415	46365	503 25 scaffold_13324:149342-150372
178	2006	droVir3	12	341	4206		1536.5	45200	423 25 scaffold_13324:149231-150101
179	2006	droWil1	23	248	8712		133	51159	759 50 scaffold_181150:697726-699293
180	2006	droWil2	23	248	8712		133	51159	759 50 CH964291:697726-699293
181	2004	droYak1	65	34	25549		25	24358	955 50 chrU:40768288-40770247
182	2005	droYak2	99	17	26922		54	37713	684 10 chr2L:22155365-22156742
183	2006	droYak3	85	143	20479		1	23713	684 10 chr2L:22155365-22156742
187	2005	echTel1	89	83	17114		1	22024	805 100 scaffold_272928:13200-14909
188	2012	echTel2	3871	93	620444		1	656358	998 100 JH980317:1376657-1378752
189	2014	egrGar1	112	213.5	33121		1093.5	229589	998 134 KK502338:445846-447975
190	2013	eidHel1	27	45	1294		1	186	68 1 KE769079:2720-2856
191	2012	eleEdw1	1643	71	141553		1	311199	1000 100 JH947463:2106240-2108339
192	2012	eptFus1	1641	75	188916		1	378407	988 100 JH977647:11513546-11515621
193	2007	equCab1	17	457	5982		1	6200	715 100 chr2:10720193-10721722
194	2007	equCab2	4	160.5	610		1909	18507	258 295 chr22:17653073-17653883
195	2014	equPrz1	39	49	5163		49	12408	78 11 KK955445:38997-39163
196	2006	eriEur1	343	435	146738		1	209198	1000 100 scaffold_366352:52823-54922
197	2012	eriEur2	3596	7	265454		1	1205265	1000 100 JH835375:3514396-3516495
198	2014	esoLuc1	9785	81	734131		15	1227519	950 10 LG19:14032217-14034126
200	2014	eurHel1	2	89.5	179		436	872	113 451 KK569808:53808-54484
202	2013	falChe1	27	206	7614		685	35918	51 10 KB397780:7020361-7020472
203	2013	falPer1	6	48.5	530		631.5	4836	36 10 KB391040:3398436-3398517
204	1880	felCat1	1343	353	504058		874	2708782	1000 100 scaffold_217423:45453-47552
205	2006	felCat3	1343	353	504058		874	2708782	1000 100 scaffold_217423:45453-47552
206	2008	felCat4	9736	503	4582767		1	9398414	1000 10 chrA2:8725380-8727389
207	2011	felCat5	27	72	6437		2	100569	488 20 chrB2:22462351-22463346
208	2014	felCat8	630	55	50300		1	89447	895 14 chrB3:27250577-27252380
209	2013	ficAlb2	632	77	75592		40.5	206854	982 1 chr7:28154426-28156390
210	2002	fr1	76	155.5	19306		5	16684	71 1 chrUn:149577204-149577346
211	2004	fr2	5	313	1682		512	2231	47 1 chrUn:336404518-336404612
212	2011	fr3	6	229	1827		286	2291	47 1 HE592038:5063-5157
213	2014	fulGla1	8	336.5	2583		103.5	1637	450 20 KK597768:8602-9521
214	2010	gadMor1	168	53	11363		27	70748	51 1 CAEA01526699:46-148
215	2004	galGal2	114	4	12930		124	17674	778 21 chr3:68417113-68418689
216	2006	galGal3	729	37	34199		5	325853	479 10 chrUn_random:55035794-55036761
217	2011	galGal4	55	401	22946		1	31537	805 100 chr19:3903221-3904930
218	2015	galGal5	1	33	33		795	795	33 795 chrUn_NT_465606v1:9086-9946
219	2014	galVar1	58964	61	5626241		419	24866346	997 1 NW_007727116v1:311725-313719
220	2006	gasAcu1	8	46.5	1970		117.5	2520	841 100 chrUn:38727446-38729227
222	2009	gavGan0	30236	134	5187944		5	145799649	915 10 scaffold24725:12789-14628
223	2014	gavSte1	5	164	848		318	2312	269 245 KK640233:828-1610
224	2012	geoFor1	32	105.5	4877		945.5	51025	617 11 JH739922:1318693-1319937
226	2009	gorGor2	6585	247	2365617		1	499615	1000 10 chr10_101645027_418909:206049-208058
227	2011	gorGor3	6926	246	2475426		1	533805	1000 10 chr10:101539188-101541197
228	2014	gorGor4	8691	94	1514940		25	982883	246 1 chr9:24397320-24397812
230	2009	haeCon1	25	39	1031		1	1745	58 10 Hcon_Contig0056815:13389-13514
231	2013	haeCon2	5378	149	831727		55	351011	700 1 scaffold_63:260903-262303
232	2014	halAlb1	11	126	1936		37	3807	466 102 KK641449:26277-27310
233	2014	halLeu1	14	28	4342		95	1676	194 10 KL869356:8708537-8708934
234	2011	hapBur1	965	95	135908		2	374038	975 20 JH425754:7557-9526
235	2011	hetBac1	3	228	1282		2	60	1000 20 GL996479v1:885362-887381
236	2011	hetGla1	743	313	285174		1994	2914751	785 43 JH165660:4306-5918
237	2012	hetGla2	595	7	44604		1	201552	1000 100 JH602085:17402968-17405067
238	2009	hg19	1	2	200		3	3000000	200 3000000 chrY:10104354-13104753
243	2013	hg38	12	78	974		44	56689	125 20 chrUn_KI270442v1:175618-175887
252	2012	jacJac1	2666	63	196366		1	569918	1000 100 JH725440:52488719-52490818
253	2011	latCha1	2038	77	159059		1	504858	955 100 JH127253:476850-478859
255	2014	lepDis1	1	5	50		229	229	50 229 KK681583:9399-9727
256	2011	lepOcu1	2079	95	232474		1	466733	1000 100 chrLG4:37780111-37782210
257	2013	lepWed1	2022	63	135843		1	1218867	1000 100 KB715312:1023296-1025395
258	2013	letCam1	1453	69	123952		1	739039	280 39 KE994354:70338-70936
259	1880	linHum0	179	48	10176		1	20986	480 100 NW_012159984:28893-29952
260	2013	lipVex1	292	92	66483		985.5	386576	876 10 KE557659:158624-160385
261	2012	loaLoa1	376	382	123384		215	94547	604 20 JH712068v1:803529-804756
262	2005	loxAfr1	79	44	11426		206	80801	687 284 scaffold_10531:71539-73196
263	2008	loxAfr2	78	165.5	20735		1078	180887	989 100 scaffold_3386:17920-19997
264	2009	loxAfr3	11	45	1924		398	9784	731 100 scaffold_211:333226-334787
265	2007	macEug1	7319	57	504656		1	562759	146 1 Scaffold27901:25044-25336
266	2009	macEug2	11689	55	752361		5	1102638	146 1 GL058785:13153-13445
267	2013	macFas5	1138	106.5	145024		204.5	1039415	849 10 chr14:81860376-81862083
268	2015	macNem1	1828	95	237662		5	834836	982 25 NW_012016132v1:18826350-18828338
269	2014	manPen1	37129	101	5536376		1	13090743	1000 1 KN006700:349054-351054
270	2014	manVit1	25	231	8844		1303	65245	701 296 KK732740:655429-657126
272	2012	mayZeb1	1831	95	241336		1	682313	1000 100 JH720538:3252564-3254663
273	2013	megLyr1	33	38	1716		1	185	83 1 KI087181:1999-2165
274	2009	melGal1	834	127	136229		1	661041	169 1 chr3:54352580-54352918
275	2014	melGal5	84	181	17431		1	76065	724 100 chrZ:7873702-7875249
278	2008	melInc2	3	77	211		201	513	98 201 MiV1ctg3:286050-286446
279	2011	melUnd1	39	89	5925		41	36796	334 20 JH556232:114057-114744
280	2014	merNub1	2	154.5	309		361	722	245 311 KK701714:10568-11368
281	2013	mesAur1	3589	71	248381		1	755166	212 100 KB708269:3930600-3931123
282	2014	mesUni1	4	347	1434		124.5	451	332 23 KK817080:7082-7768
283	1880	micMur0	295	256	90483		78	749299	997 100 GeneScaffold_4747:166512-168605
284	2007	micMur1	124	124.5	33320		952.5	207469	969 100 scaffold_5185:107104-109141
285	2015	micMur2	774	9	85250		5	267164	999 25 KQ057470v1:2292330-2294352
286	2017	micMur3	325	95	73918		5	262987	898 10 chr2:108635511-108637316
287	2012	micOch1	6788	65	483435		1	1507707	993 100 chr6:54381083-54383168
288	2011	mm10	2	390.5	781		25879.5	51759	477 1759 chrX_GL456233_random:239940-242652
292	1880	mm5	204	48.5	30180		1	76884	921 100 chr6:132460596-132462537
293	2005	mm6	117	48	17647		1	48212	768 100 chr14:100566071-100567706
294	2005	mm7	45	48	5475		1	64491	451 100 chr15:68974498-68975499
295	2006	mm8	6	161	1257		162.5	50878	520 353 chr14:87009574-87010966
296	2007	mm9	2	390.5	781		25879.5	51759	477 1759 chrX_random:239940-242652
297	2004	monDom1	18	53.5	1891		127	11341	696 100 scaffold_14754:178069-179560
298	2005	monDom2	5	428	2012		1	520	870 100 scaffold_38:23849795-23851634
299	2006	monDom4	9	183	3070		1	21732	870 1 chr1:400420041-400421781
300	2006	monDom5	9	183	3070		1	21732	870 1 chr1:424248968-424250708
301	2013	musDom2	1284	85	165577		1	473996	1000 1 KB855954:134298-136298
302	2011	musFur1	1009	84	107706		44	286510	1000 20 GL897138:9717-11736
303	2013	myoBra1	356	119	85889		1109	766318	1000 31 KE163605:2655193-2657223
304	2012	myoDav1	303	151	56967		1283	942238	502 19 KB106370:3092722-3093744
305	2006	myoLuc1	42	47	6392		1551	125787	388 100 scaffold_150441:136761-137636
306	2010	myoLuc2	7	39	357		41	3363	75 119 GL429781:8032929-8033197
307	2014	nanGal1	730	126	149781		902.5	980462	740 12 KL200152:4088120-4089611
308	2015	nanPar1	1716	194	477991		974	2590489	552 12 KN907832v1:31307-32422
309	2014	nasLar1	614	43	93736		7	126885	117 1 chr1:6190345-6190579
310	2013	necAme1	459	54	28538		1	92887	366 100 KI657476v1:37386-38217
311	2007	nemVec1	25	378	10288		829	17106	769 1 scaffold_3968:6459-7997
312	2011	neoBri1	5040	95	1321574		2	665865	998 20 JH422308:3325010-3327025
313	2014	nipNip1	41	154	11937		109	77358	514 15 KL411148:2104426-2105468
314	2010	nomLeu1	859	141	220161		532	1139352	999 100 GL397299:16863535-16865632
315	2011	nomLeu2	859	141	220161		532	1139352	999 100 GL397299:16863535-16865632
316	2012	nomLeu3	861	141	220464		519	1139552	999 100 chr5:41669854-41671951
317	2014	notCor1	174	91.5	17942		51	21717	407 1 KL665414:596304-597118
318	1880	ochPri0	569	101	138948		1065	1840608	994 100 GeneScaffold_4726:276480-278567
319	2008	ochPri2	313	55	35317		1365	1110261	967 100 scaffold_3914:61889-63922
320	2012	ochPri3	1958	69	148238		1	499781	890 100 JH802177:1348834-1350713
321	2012	octDeg1	2582	68	231489		1	464548	985 100 JH651571:12809669-12811738
322	2013	odoRosDiv1	2581	68	180258		5	263661	970 50 KB229427:1083192-1085181
323	2013	oncVol1	10	89.5	2046		1	18211	739 1 HG738137v1:12037947-12039425
324	2014	opiHoa1	80	170.5	23360		1723.5	216549	855 28 KK733898:82987-84724
325	2013	orcOrc1	2677	66	181922		5	357696	943 50 NW_004438742v1:126518-128453
326	2011	oreNil1	1903	93	208888		2	734264	969 20 GL831201:3474999-3476956
327	2007	ornAna1	793	49	70053		103	148119	718 10 Contig3645:38619-40064
328	2007	ornAna2	793	49	70053		103	148119	718 10 chrUn_DS182721v1:38619-40064
329	2012	oryAfe1	3595	65	293465		1	691489	998 100 JH863829:9451309-9453404
330	2005	oryCun1	122	278.5	44566		462.5	91832	978 100 scaffold_172390:787-2842
331	2009	oryCun2	12	44.5	836		446	9055	327 185 chr13:6520795-6521633
332	2006	oryLat1	141	144	25310		1	215389	561 10 chrUn:20300712-20301843
333	2005	oryLat2	141	144	25310		1	253399	445 10 ultracontig221:437957-438856
335	2011	otoGar3	3569	86	332700		39	663694	985 20 GL873641:2218538-2220527
336	2010	oviAri1	5934	53	394316		37	1966190	264 1 chr15:8985870-8986398
337	2012	oviAri3	149	193	51933		215	178445	46 3 chr3:3466521-3466615
338	2015	oxyTri2	523	37	30028		5	25856	186 1 chrMACsb310:15510646-15511018
339	2013	panHod1	321	129	65178		1092	702884	628 10 KE118776:1218541-1219806
340	2012	panPan1	63	133	11209		2	22114	33 1 JH650468:842203-842269
341	2015	panPan2	70	16	13388		2	1045522	35 1 chr4:127787143-127787213
342	2013	panRed1	123	56	6626		1	3069	62 10 KB454926:42673-42806
343	2013	panTig1	59	111	12591		7	69429	398 9 KE721804:6447970-6448774
344	2003	panTro1	5719	388	2244063		1	3504041	998 100 chr6:137473031-137475126
345	2006	panTro2	692	52	62006		24	238273	717 10 chr10_random:5205395-5206838
346	2010	panTro3	472	54	44241		238.5	180280	908 10 chr2B:124438762-124440587
347	2011	panTro4	472	54	44241		238.5	180280	908 10 chr2B:124438762-124440587
348	2016	panTro5	2937	199	537385		1	3625772	199 10 chr12_NW_015974005v1_random:1130-1537
349	2012	papAnu2	727	138	144060		5	96682	46 1 chr4:20965571-20965663
350	2008	papHam1	22041	56	1338445		5	2303596	376 50 scaffold4259:86690-87491
351	2014	pelCri1	3	72	517		186	808	386 173 KK471910:16412-17356
352	2011	pelSin1	126	138	35062		411.5	167243	398 10 JH212629:287260-288065
353	2013	perManBai1	7908	8	846184		5	1552640	1000 50 KI615759:2266069-2268118
354	2007	petMar1	542	47	48234		1	42185	746 10 Contig3178:18125-19626
355	2010	petMar2	31	86	5681		732	39461	617 100 GL479790:15647-16980
356	2014	phaCar1	2	206	412		79	158	261 100 KL416242:66648-67269
357	2014	phaLep1	14	179	2930		31	4227	343 85 KK448216:3226-3996
358	2014	phoRub1	4	288.5	1016		195.5	823	373 83 KK425162:48893-49721
359	2013	phyCat1	684	82.5	86555		1	130377	1000 1 KI402232:538054-540054
360	2014	picPub1	59	83	12175		97	106482	111 28 KL217012:74310-74559
361	2013	poeFor1	848	75	84492		1	328834	972 1 KI520524:847-2791
362	2014	poeRet1	1124	87	157426		1	421252	988 1 chrLG12:26078504-26080480
363	1880	ponAbe1	1528	4	90824		133.5	275853	662 10 Contig208:1185633-1186966
364	2007	ponAbe2	2239	54	444541		1	829820	769 1 chr11:46659515-46661053
365	2014	priExs1	49	121	12100		1773	95166	181 38 scaffold470:42605-43004
366	2007	priPac1	121	49	10688		209	31254	90 1 chrUn:114913780-114913960
368	2014	priPac3	168	49.5	13153		274.5	50322	90 1 Ppa_Contig2432:805-985
369	2008	proCap1	116	38	5205		534.5	65619	53 100 scaffold_8867:32393-32598
370	2013	pseHum1	775	142	173055		1	547111	1000 10 KB221227:5459003-5461012
371	2012	pteAle1	97	127	19728		1023	161616	421 16 KB031157:14150143-14151000
372	2014	pteGut1	1	282	282		72	720	282 720 KL237369:530-1813
373	2013	ptePar1	3	31	102		1	3	40 1 KE827285:1815-1895
374	2008	pteVam1	68	43.5	9173		301.5	27212	971 100 scaffold_4327:120126-122167
375	2011	punNye1	1574	95	242736		2	332782	992 20 JH419321:67178-69181
376	2014	pygAde1	42	113	7740		1160.5	93198	78 17 KL224983:2418932-2419104
377	2013	pytBiv1	21222	101	2315791		99	2845128	649 10 KE957835:3697-5004
382	2005	rheMac1	2816	39	116369		5	214725	205 50 SCAFFOLD120616:17732-18191
383	2010	rheMac3	288	192.5	71777		1140.5	887215	949 27 chr15:33329332-33331256
384	2015	rheMac8	80	99.5	20122		917	437685	823 20 chr7:1436259-1437924
385	2016	rhiBie1	4262	228	1007049		1	2148972	965 1 NW_016817388v1:689035-690965
386	2013	rhiFer1	2	42.5	85		1	2	45 1 KI143993:8550-8640
387	2014	rhiRox1	187	158	50999		529	184770	584 11 KN296100v1:378785-379963
388	1880	ricCom1	41	332	13808		738	38675	787 3 EQ973819:99412-100988
389	2003	rn3	574	143	146802		5	425043	72 1 chr4:1247786-1247930
390	2004	rn4	567	141	142452		5	424693	72 1 chr4:1247786-1247930
391	2012	rn5	64	516	32231		5	28921	712 1 chr3:45275318-45276742
392	2014	rn6	719	29	280406		5	1258566	712 1 chr3:40184108-40185532
393	2006	rodEnt13	1	65	65		-40333062	-40333062	65 -40333062 1:40332999-66
398	2011	saiBol1	1541	77	139356		1	303093	1000 100 JH378136:528784-530883
400	2011	sarHar1	17494	22	2993318		158	6574378	958 10 chr1_GL834475_random:882665-884590
401	2013	sebNig1	168	55.5	11782		54.5	11235	82 2 KI499294:4621-4786
402	2013	sebRub1	119	55	9711		51	8253	142 1 KI444651:3586-3870
403	2014	serCan1	213	97	36640		2	33876	971 1 HG009242:4536330-4538272
404	2006	sorAra1	229	33	79670		1	75086	895 100 scaffold_247593:25660-27549
405	2008	sorAra2	3389	75	359891		1	822102	992 100 JH798160:15867029-15869112
406	2008	speTri1	99	46	12167		879	197520	835 100 scaffold_1259:158788-160557
407	2011	speTri2	2964	95	353556		1	565083	1000 100 JH393486:3045059-3047158
408	2014	stePar1	554	65	47063		1	120402	952 1 KK580894:321554-323458
409	1880	strCam0	20	243	7267		836.5	40260	184 13 superscaffold45:7169362-7169742
410	2014	strCam1	19	246	7125		759	39346	184 13 KL206666:4120006-4120386
411	2005	strPur1	1291	153	303896		5	238579	89 1 Scaffold16400:576-754
412	2006	strPur2	367	55	25281		5	79238	35 1 Scaffold12735:108654-108724
413	2009	strPur3	989	56	64991		96	187408	35 1 Scaffold740:110486-110556
414	2011	strPur4	1612	1	326953		5	206009	425 3 Scaffold112:361603-362455
416	2014	strRat2	2	54.5	109		6	12	67 1 chrUn_LN609483v1:243-377
418	2009	susScr1	371	43	34151		1	66500	986 100 chr2:139016697-139018768
419	2009	susScr2	371	43	34151		1	66500	986 100 chr2:139016697-139018768
420	2011	susScr3	643	76	67571		-5721	-21397319	86 1 chr7:8729166-8729338
421	1880	taeGut0	212	45	20495		442	116920	624 10 Contig233:50949-52206
422	2008	taeGut1	223	45	22373		1	22300	689 100 chr21_random:54357-55834
423	2013	taeGut2	219	44	21273		1	21900	624 100 chr27:56676-58023
425	2013	takFla1	365	241	91817		788	407496	503 1 KE121297:329-1335
426	2013	tarIhg38	12	78	974		44	56689	125 20 chrUn_KI270442v1:175618-175887
427	2008	tarSyr1	331	7	45530		191	102767	892 100 scaffold_111889:3660-5543
428	2013	tarSyr2	189	56	17645		2	9572	1000 20 KE939253v1:939796-941815
429	2014	tauEry1	1	5	50		394	394	50 394 KL466072:20829-21322
430	2004	tetNig1	64	272.5	21868		1	53904	336 59 chr5:807217-807947
431	2007	tetNig2	70	298	25569		5	32404	336 59 chr5:799217-799947
432	2014	tinGut1	18	96	3855		1086	21982	519 68 KL400865:236113-237218
433	2014	tinGut2	18	96	3855		1086	21982	519 68 KL895544:236113-237218
434	2005	triCas1	75	1	8201		5	6900	214 50 Contig5855_Contig1469:226794-227271
435	2005	triCas2	63	62	5442		5	313244	412 50 chrUn_46:283716-284589
436	2011	triMan1	5748	75	527972		1	726640	1000 100 JH594622:8537918-8540017
437	2011	triSpi1	3	55	806		1	230	705 10 GL622790v1:172202-173621
438	2014	triSui1	37	138	7959		1449	82883	120 68 KL363219v1:83933-84240
440	2013	tupChi1	914	220.5	290632		987.5	1823897	861 16 KB320907:3306581-3308318
441	2008	turTru1	112	41.5	15556		388	52461	993 100 scaffold_108458:6669-8754
442	2011	turTru2	5612	7	466776		188.5	1979352	44 1 JH496197:2095-2183
443	2014	tytAlb1	2	17	340		326	652	289 220 KK379918:2163-2960
444	2014	ursMar1	205	41	12130		3384	708704	711 49 KK498595:3401141-3402611
445	2007	venter1	64	411.5	26995		1	64592	862 20 chr2:102870978-102872721
446	2008	vicPac1	221	251	71912		276	310711	993 100 scaffold_812:411693-413778
447	2013	vicPac2	1245	69	115488		369	430947	685 20 KB632527:971889-973278
448	1880	vicVic1	218	252.5	71401		263	309237	993 100 scaffold_812:411693-413778
449	2016	xenLae2	2660	43	112843		265	1906995	50 10 chr6S:105116072-105116181
450	2004	xenTro1	140	177.5	37717		889.5	437093	94 1 scaffold_26179:153-341
451	2005	xenTro2	116	229.5	33928		806.5	320973	83 1 scaffold_13788:6263-6429
452	2009	xenTro3	116	229.5	33928		806.5	320973	83 1 GL185958:6263-6429
453	2012	xenTro7	98	82.5	16149		201	69741	775 100 KB022861:7377-9026
454	2016	xenTro9	172	105.5	27368		1	99243	775 100 chrUn_NW_016684502v1:7377-9026
455	2012	xipMac1	548	5	32896		131	334271	30 1 JH556915:15756-15816
457	2013	zonAlb1	538	79	50834		1	134738	990 1 KB913055:7474487-7476467