Bandwidth testing
From genomewiki
Units
For these measurements:
- 1 kB/s = 1,000 bytes per second
- 1 mB/s = 1,000,000 bytes per second
- 1 gB/s = 1,000,000,000 bytes per second
Memory:
- 1 Gb == 1024^3 bytes = 1,073,741,824 bytes
Machines tested
machine name | processor speed | memSize | 10 files of size | dd /dev/zero to /dev/shm | cp /dev/shm to /tmp | cp /dev/shm to hive | rsync /dev/shm to /dev/shm | rsync /dev/shm via rsh | UDT via UPD |
---|---|---|---|---|---|---|---|---|---|
hgwdev | Opteron 1150 Mhz | 32 Gb | 1 gB | 5278 mB/s 10X dd | 287 mB/s | 54 mB/s | 1638 mB/s 20X rsync | n/a | 4070 mB/s 10X send |
kolossus | Intel 2261 Mhz | 1 Tb | 1 gB | 6700 mB/s 10X dd | 192 mB/s | 41 mB/s | 120 mB/s 4X rsync | 115 mB/s | 1135 mB/s |
okazaki | Intel 1600 Mhz | 2 Gb | 75 mB | 700 mB/s | 90 mB/s | 11.3 mB/s | 11.5 mB/s | 11.6 mB/s | 10.7 mB/s 4X send |
mitzie | Intel 400 Mhz | 512 Kb | 18 mB | 113 mB/s | 25 mB/s | n/a | 54.4 kB/s up 316 kB/s down | n/a | |
cloud0 | Opteron 2000 Mhz | 7.5 Gb | 288 mB | 940 mB/s 4X dd | 78 mB/s | n/a | 16 mB/s 2X rsync | 43 mB/s 3X rsync | 46 mB/s 3X send |
Procedure
Sizing files based on available /dev/shm space. Largest file size limited to 1 gB.
The /dev/zero to /dev/shm write is done ten times with a dd command:
dd if=/dev/zero of=/dev/shm/memToMem.$I.zero bs=200000 count=$ddCount
The /dev/shm copy to /tmp is done ten times with the cp command:
cp -p /dev/shm/memToMem.$I.zero ./memToFile.$I.zero
These 10X copies were repeated three times. The slowest measurement of the three times was recorded.
The rsync /dev/shm to /dev/shm was to and from hgwdev. Multiple instances of rsync from kolossus to hgwdev seemed to add together for a total bandwidth higher than a single instance of rsync.
The machine mitzie is at the end of a Santa Cruz DSL line and over a WiFi network connection across the driveway to the garage.