Ensembl QA

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Revision as of 23:21, 21 July 2010 by Marygoldman (talk | contribs) (Adding point about looking at hgFixed, as well as numbering)
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There are periodic updates to all Ensembl Genes tracks in all dbs.

  • A good script to run that checks many things is checkEnsembl.sh.
  • All Ensembl builds are documented in the single file:
   src/hg/makeDb/doc/makeEnsembl.txt
  • You can find all ensembl gene builds in:
   /hive/data/genomes/<db>/bed/ensGene.NN/
where NN is the ensembl version number.
  • To get the links to go to the correct place at Ensembl, you will have to check for the appropriate rows in trackVersion table in hgFixed database
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