DanRer7 conservation lastz parameters
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See Also:
- DanRer7 Genome size statistics
- DanRer7 conservation alignment
- Hg19 Genome size statistics
- Hg19 conservation alignment
- Hg19 Andy's alignment notes
- Hg18 44way blastz parameters
- Hg18 Genome size statistics
- Hg18 44way alignment
| The HoxD55 scoring matrix is: | |||||||||||||||||||||||||
O=400 E=30 |
do not edit, automatically generated table
| query | abridged repeats(no) |
M(40M) | K(3000) | L(3000) | Q | Y(9400) | program run | E(30) | H(0) | O(400) | T(1) | chain table date |
% of danRer7 matched (chainLink table) |
% of query matched (chainLinkDanRer7) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Stickleback gasAcu1 | no | 50 | 3000 | 3000 | HoxD55.q | 9400 | lastz | 30 | 0 | 400 | 1 | 2010-12-17 | 10.270% | 27.522% |
| Medaka oryLat2 | no | 50 | 3000 | 3000 | HoxD55.q | 9400 | lastz | 30 | 0 | 400 | 1 | 2010-12-17 | 10.032% | 17.780% |
| Tetraodon tetNig2 | no | 50 | 3000 | 3000 | HoxD55.q | 9400 | lastz | 30 | 0 | 400 | 1 | 2010-12-17 | 6.273% | 23.571% |
| Fugu fr2 | no | 50 | 3000 | 3000 | HoxD55.q | 9400 | lastz | 30 | 0 | 400 | 1 | 2010-12-21 | 7.363% | 20.360% |
| X. tropicalis xenTro2 | no | 40M | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2010-12-17 | 6.428% | 6.610% |
| Mouse mm9 | no | 40M | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2010-12-17 | 5.104% | 2.602% |
| Human hg19 | no | 40M | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2010-12-20 | 6.151% | 2.790% |
