PanTro3 conservation alignment

	UCSC db name	Scientific name	Common name	assembly date	source version	Repeat Masker	Window Masker	chain on panTro3	% of panTro3 matched (chainLink table)
01	panTro3	Pan troglodytes	Chimp	Oct. 2010 (CGSC 2.1.3/panTro3)	CGSC 2.1.3 (GCA_000001515.3)	2011-02-22	N/A	N/A	N/A
02	hg19	Homo sapiens	Human	Feb. 2009 (GRCh37/hg19)	GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)	2009-08-15	N/A	2011-02-23	95.597%
03	ponAbe2	Pongo pygmaeus abelii	Orangutan	July 2007 (WUGSC 2.0.2/ponAbe2)	WUSTL 3.0	2009-08-15	N/A	2011-03-06	89.586%
04	rheMac2	Macaca mulatta	Rhesus	Jan. 2006 (MGSC Merged 1.0/rheMac2)	Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4	2009-08-15	N/A	2011-03-06	81.342%
05	calJac3	Callithrix jacchus	Marmoset	March 2009 (WUGSC 3.2/calJac3)	WUSTL 3.2 (GCA_000004665.1)	2010-02-05	N/A	2011-03-06	69.662%
06	equCab2	Equus caballus	Horse	Sep. 2007 (Broad/equCab2)	Broad Institute EquCab2	2009-08-14	N/A	2011-03-06	56.504%
07	canFam2	Canis lupus familiaris	Dog	May 2005 (Broad/canFam2)	Broad Institute v. 2.0	2009-08-15	N/A	2011-03-06	51.588%
08	mm9	Mus musculus	Mouse	July 2007 (NCBI37/mm9)	NCBI Build 37	2009-08-14	N/A	2011-03-07	32.044%
09	rn4	Rattus norvegicus	Rat	Nov. 2004 (Baylor 3.4/rn4)	Baylor HGSC v. 3.4	2009-08-15	N/A	N/A	N/A
10	monDom5	Monodelphis domestica	Opossum	Oct. 2006 (Broad/monDom5)	Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)	2009-08-14	2009-08-14	2011-03-11	13.743%
11	galGal3	Gallus gallus	Chicken	May 2006 (WUGSC 2.1/galGal3)	Chicken Genome Sequencing Consortium May 2006 release	2009-08-15	2007-01-02	2011-03-02	4.557%
12	danRer6	Danio rerio	Zebrafish	Dec. 2008 (Zv8/danRer6)	Wellcome Trust Sanger Institute, Zv8 assembly (CAAK00000000.5)	2009-09-02	N/A	N/A	N/A