FelCat4 Genome size statistics

see also

• Cat 6-way FelCat4 conservation alignment
• Cat 6-way FelCat4 conservation lastz parameters
• all other UCSC Multiple Alignments

statistics collected from UCSC 2bit files

• The external links from the UCSC database name go to the sequencing center information pages for this genome
• N bases == unknown bases in the assembly marked by "N"
• non-N bases == called bases in the assembly
• total size == all bases in assembly, N and non-N
• The coverage numbers are taken directly from information README files from the sequencing center
• The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser
• % masked == masked either with WindowMasker or RepeatMasker plus TRF simple repeats
• % of felCat4 matched (chainLink table) == featureBits felCat4 chain<Db>Link == alignment coverage

do not edit, automatically generated table

order count	ucsc db name	chrom count	total size	non-N bases	N base count	% masked	common name	coverage	N50 chrom.sizes	alignment type	% of felCat4 matched (chainLink table)	chain minScore	chain linearGap
01	felCat4	104,054	3,160,303,948	1,990,635,005	1,169,668,943	% 40.58	Cat	2.8X	164876586	N/A	N/A	1000	N/A
02	ailMel1	81,467	2,299,509,015	2,245,312,831	54,196,184	% 38.96	Panda	73X	1281781	RecipBest	75.536%	3000	medium
03	canFam2	41	2,531,673,953	2,384,996,543	146,677,410	% 40.63	Dog	7.6X	67211953	SyntenicNet	73.720%	1000	N/A
04	hg19	93	3,137,161,264	2,897,310,462	239,850,802	% 50.63	Human	20X	146364022	SyntenicNet	60.870%	1000	N/A
05	mm9	35	2,725,765,481	2,620,345,972	105,419,509	% 44.09	Mouse	20X	131738871	SyntenicNet	30.972%	1000	N/A
06	monDom5	11	3,605,631,728	3,501,660,299	103,971,429	% 55.95	Opossum	6.8X	527952102	SyntenicNet	8.364%	1000	N/A