OrnAna1 Genome size statistics

see also

• Platypus 6-way OrnAna1 conservation alignment
• Platypus 6-way OrnAna1 conservation lastz parameters
• all other UCSC Multiple Alignments

statistics collected from UCSC 2bit files

• The external links from the UCSC database name go to the sequencing center information pages for this genome
• N bases == unknown bases in the assembly marked by "N"
• non-N bases == called bases in the assembly
• total size == all bases in assembly, N and non-N
• The coverage numbers are taken directly from information README files from the sequencing center
• The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser
• % masked == masked either with WindowMasker or RepeatMasker plus TRF simple repeats
• % of ornAna1 matched (chainLink table) == featureBits ornAna1 chain<Db>Link == alignment coverage

do not edit, automatically generated table

order count	ucsc db name	chrom count	total size	non-N bases	N base count	% masked	common name	coverage	N50 chrom.sizes	alignment type	% of ornAna1 matched (chainLink table)	chain minScore	chain linearGap
01	ornAna1	201,523	1,996,811,212	1,842,235,522	154,575,690	% 47.89	Platypus	6X	991605	N/A	N/A	1000	N/A
02	monDom4	10	3,605,614,649	3,501,643,220	103,971,429	% 55.69	Opossum	6.5X	526135210	Net	17.177%	5000	loose
03	hg18	49	3,107,677,273	2,881,421,696	226,255,577	% 48.85	Human	20X	146274826	Net	12.966%	1000	loose
04	mm8	34	2,664,455,088	2,567,283,688	97,171,400	% 42.43	Mouse	20X	132085098	Net	8.236%	1000	loose
05	galGal3	57	1,100,480,441	1,042,583,135	57,897,306	% 9.85	Chicken	6.6X	94230402	Net	6.431%	1000	loose
06	anoCar1	7,233	1,781,602,899	1,741,478,929	40,123,970	% 42.56	Lizard	6.8X	2439125	Net	5.044%	1000	loose