OrnAna1 conservation lastz parameters
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See Also
- Platypus 6-way OrnAna1 Genome size statistics
- Platypus 6-way OrnAna1 conservation alignment
- all other UCSC Multiple Alignments
| The default scoring matrix is: | The HoxD55 scoring matrix is: | The human-chimp.v2 scoring matrix is: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
O=400 E=30 |
O=400 E=30 |
O=600 E=150 |
do not edit, automatically generated table
| query | abridged repeats(no) |
M(0) | K(3000) | L(3000) | Q | Y(9400) | program run | E(30) | H(0) | O(400) | T(1) | chain table date |
% of ornAna1 matched (chainLink table) |
% of query matched (chainLinkOrnAna1) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Opossum monDom4 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | blastz.v7 | 30 | 2000 | 400 | 1 | 2009-08-15 | 17.177% | 8.332% |
| Human hg18 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-08-15 | 12.966% | 7.870% |
| Mouse mm8 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 8.236% | 5.608% |
| Chicken galGal3 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-08-15 | 6.431% | 10.101% |
| Lizard anoCar1 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-08-15 | 5.044% | 5.489% |
