Hg19 100way conservation alignment
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see also
- Human 100-way Hg19 100way Genome size statistics
- Human 100-way Hg19 100way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on hg19 |
% of hg19 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | hg19 | Homo sapiens | Human | Feb. 2009 (GRCh37/hg19) | GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) | 2009-08-15 | 2012-04-19 | N/A | N/A |
| 02 | panTro4 | Pan troglodytes | Chimp | Feb. 2011 (CSAC 2.1.4/panTro4) | CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) | 2012-01-09 | 2012-01-09 | 2013-01-25 | 95.279% |
| 03 | gorGor3 | Gorilla gorilla gorilla | Gorilla | May 2011 (gorGor3.1/gorGor3) | Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) | 2011-11-16 | 2013-06-21 | 2011-10-17 | 89.876% |
| 04 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 (WUGSC 2.0.2/ponAbe2) | WUSTL 3.0 | 2009-08-15 | 2013-06-21 | 2009-08-15 | 91.350% |
| 05 | nomLeu3 | Nomascus leucogenys | Gibbon | Oct. 2012 (GGSC Nleu3.0/nomLeu3) | Gibbon Genome Sequencing Consortium | 2013-03-04 | 2013-03-01 | 2013-03-22 | 87.764% |
| 06 | chlSab1 | Chlorocebus sabaeus | green monkey | 12-Jun-2013 (GCA_000409795.1) | Vervet Genomics Consortium/Chlorocebus_sabeus 1.0 | 2013-06-30 | 2013-06-30 | 2013-06-30 | 86.446% |
| 07 | macFas5 | Macaca fascicularis | crab-eating macaque | 12-Jun-2013 (GCA_000364345.1) | Washington University (WashU)/Macaca_fascicularis_5.0 | 2013-06-30 | 2013-06-30 | 2013-06-30 | 86.666% |
| 08 | rheMac3 | Macaca mulatta | Rhesus | Oct. 2010 (BGI CR_1.0/rheMac3) | Beijing Genomics Institute, Shenzhen (GCA_000230795.1) | 2011-12-30 | 2012-01-03 | 2013-07-04 | 82.859% |
| 09 | papHam1 | Papio hamadryas | Baboon | Nov. 2008 (Baylor Pham_1.0/papHam1) | Baylor BCM HGSC Pham_1.0 | 2009-09-02 | 2012-05-03 | 2009-09-02 | 82.810% |
| 10 | saiBol1 | Saimiri boliviensis | Squirrel monkey | Oct. 2011 (Broad/saiBol1) | Broad SaiBol1.0 (GCA_000235385.1) | 2012-01-07 | 2012-01-09 | 2013-06-30 | 69.598% |
| 11 | calJac3 | Callithrix jacchus | Marmoset | March 2009 (WUGSC 3.2/calJac3) | WUSTL 3.2 (GCA_000004665.1) | 2010-02-05 | 2013-06-21 | 2010-02-11 | 70.654% |
| 12 | otoGar3 | Otolemur garnettii | Bushbaby | Mar. 2011 (Broad/otoGar3) | Broad Institute (GCA_000181295.3) | 2012-03-13 | 2012-03-14 | 2013-07-02 | 54.830% |
| 13 | tupChi1 | Tupaia chinensis | Chinese tree shrew | 31-Jan-2013 (GCA_000334495.1) | BGI/TupChi_1.0 | 2013-07-05 | 2013-07-05 | 2013-07-06 | 46.558% |
| 14 | cerSim1 | Ceratotherium simum | White rhinoceros | May 2012 (CerSimSim1.0/cerSim1) | Broad Institute | 2012-08-28 | 2012-08-28 | 2012-10-19 | 58.103% |
| 15 | equCab2 | Equus caballus | Horse | Sep. 2007 (Broad/equCab2) | Broad Institute EquCab2 | 2009-08-14 | 2013-06-21 | 2009-09-02 | 57.050% |
| 16 | camFer1 | Camelus ferus | Bactrian camel | 25-Dec-2011 (GCA_000311805.1) | The Bactrian Camels Genome Sequencing and Analysis Consortium/CB1 | 2013-07-12 | 2013-07-12 | 2013-07-13 | 50.419% |
| 17 | vicPac2 | Vicugna pacos | Alpaca | Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) | Broad Institute | 2013-06-10 | 2013-06-10 | 2013-06-18 | 50.193% |
| 18 | orcOrc1 | Orcinus orca | Killer whale | 31-Jan-2013 (GCA_000331955.1) | Marine mammals/Oorc_1.1 | N/A | N/A | N/A | N/A |
| 19 | turTru2 | Tursiops truncatus | Dolphin | Oct. 2011 (Baylor Ttru_1.4/turTru2) | Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) | 2012-04-14 | 2012-04-14 | N/A | N/A |
| 20 | musFur1 | Mustela putorius furo | Ferret | Apr. 2011 (MusPutFur1.0/musFur1) | Ferret Genome Sequencing Consortium | 2013-03-05 | 2013-03-05 | 2013-07-12 | 50.993% |
| 21 | oryAfe1 | Orycteropus afer | Aardvark | 24-May-2012 (GCA_000298275.1) | Broad Institute/OryAfe1.0 | 2013-07-07 | 2013-07-07 | 2013-07-09 | 41.668% |
| 22 | speTri2 | Spermophilus tridecemlineatus | Squirrel | Nov. 2011 (Broad/speTri2) | Broad Institute (GCA_000236235.1) | 2012-03-14 | 2012-03-15 | N/A | N/A |
| 23 | pteAle1 | Pteropus alecto | Black Flying-fox | 06-Aug-2012 (GCA_000325575.1) | BGI/ASM32557v1 | N/A | N/A | N/A | N/A |
| 24 | susScr3 | Sus scrofa | Pig | Aug. 2011 (SGSC Sscrofa10.2/susScr3) | SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) | 2012-04-12 | 2012-04-13 | N/A | N/A |
| 25 | triMan1 | Trichechus manatus latirostris | Manatee | Oct. 2011 (Broad v1.0/triMan1) | Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) | 2012-03-28 | 2012-03-29 | 2013-07-11 | 46.580% |
| 26 | octDeg1 | Octodon degus | brush-tailed rat | 13-Apr-2012 (GCA_000260255.1) | Broad Institute/OctDeg1.0 | 2013-07-07 | 2013-07-07 | 2013-07-07 | 41.385% |
| 27 | pteVam1 | Pteropus vampyrus | Megabat | Jul. 2008 (Broad/pteVam1) | Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) | 2009-09-02 | 2012-05-02 | 2009-09-02 | 45.414% |
| 28 | loxAfr3 | Loxodonta africana | Elephant | Jul. 2009 (Broad/loxAfr3) | Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) | 2009-09-02 | 2013-06-21 | 2009-09-02 | 46.636% |
| 29 | felCat5 | Felis catus | Cat | Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) | International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2) | 2012-04-12 | 2012-04-13 | 2013-07-13 | 52.426% |
| 30 | ailMel1 | Ailuropoda melanoleuca | Panda | Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) | BGI-Shenzhen AilMel 1.0 Dec. 2009 | 2010-02-03 | 2013-06-21 | 2010-02-04 | 50.022% |
| 31 | canFam3 | Canis lupus familiaris | Dog | Sep. 2011 (Broad CanFam3.1/canFam3) | Broad CanFam3.1 (GCA_000002285.2) | 2012-01-05 | 2012-01-06 | 2012-07-04 | 51.848% |
| 32 | chrAsi1 | Chrysochloris asiatica | Cape golden mole | 01-Aug-2012 (GCA_000296735.1) | Broad Institute/ChrAsi1.0 | 2013-07-07 | 2013-07-07 | 2013-07-09 | 34.209% |
| 33 | dasNov3 | Dasypus novemcinctus | Armadillo | Dec. 2011 (Baylor/dasNov3) | Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) | 2012-04-12 | 2012-04-13 | 2013-07-09 | 46.571% |
| 34 | oryCun2 | Oryctolagus cuniculus | Rabbit | Apr. 2009 (Broad/oryCun2) | Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) | 2009-09-02 | 2013-06-21 | 2009-09-02 | 44.317% |
| 35 | myoDav1 | Myotis Davidii | David's Myotis (bat) | 17-Aug-2012 (GCA_000327345.1) | BGI/ASM32734v1 | N/A | N/A | N/A | N/A |
| 36 | panHod1 | Pantholops hodgsonii | Tibetan antelope | 28-May-2013 (GCA_000400835.1) | BGI/PHO1.0 | 2013-07-15 | 2013-07-15 | 2013-07-17 | 46.863% |
| 37 | lepWed1 | Leptonychotes weddellii | Weddell seal | 29-Mar-2013 (GCA_000349705.1) | Broad Institute/LepWed1.0 | 2013-07-11 | 2013-07-11 | 2013-07-12 | 52.424% |
| 38 | odoRosDiv1 | Odobenus rosmarus divergens | Pacific walrus | 16-Jan-2013 (GCA_000321225.1) | Marine mammals/Oros_1.0 | 2013-07-12 | 2013-07-12 | 2013-07-13 | 53.559% |
| 39 | myoLuc2 | Myotis lucifugus | Microbat | Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) | Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) | 2010-11-03 | 2013-06-21 | N/A | N/A |
| 40 | eptFus1 | Eptesicus fuscus | big brown bat | 25-Jul-2012 (GCA_000308155.1) | Broad Institute/EptFus1.0 | N/A | N/A | N/A | N/A |
| 41 | bosTau7 | Bos taurus | Cow | Oct. 2011 (Baylor Btau_4.6.1/bosTau7) | Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4) | 2012-01-04 | 2012-01-06 | 2012-01-23 | 46.971% |
| 42 | capHir1 | Capra hircus | domestic goat | 31-May-2012 (GCA_000317765.1) | International Goat Genome Consortium/CHIR_1.0 | 2013-07-15 | 2013-07-15 | 2013-07-17 | 46.498% |
| 43 | oviAri3 | Ovis aries | Sheep | Aug. 2012 (ISGC Oar_v3.1/oviAri3) | International Sheep Genome Consortium | 2013-06-10 | 2013-06-09 | 2013-06-26 | 46.833% |
| 44 | hetGla2 | Heterocephalus glaber | Naked mole-rat | Jan. 2012 (Broad HetGla_female_1.0/hetGla2) | Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) | 2012-04-14 | 2012-04-14 | 2013-07-17 | 47.600% |
| 45 | eleEdw1 | Elephantulus edwardii | Cape elephant shrew | 01-Aug-2012 (GCA_000299155.1) | Broad Institute/EleEdw1.0 | 2013-07-07 | 2013-07-07 | 2013-07-09 | 27.675% |
| 46 | jacJac1 | Jaculus jaculus | lesser Egyptian jerboa | 31-May-2012 (GCA_000280705.1) | Broad Institute/JacJac1.0 | 2013-07-15 | 2013-07-15 | 2013-07-16 | 35.106% |
| 47 | chiLan1 | Chinchilla lanigera | Chinchilla | May 2012 (ChiLan1.0/chiLan1) | Broad Institute | 2012-07-28 | 2012-07-27 | N/A | N/A |
| 48 | cavPor3 | Cavia porcellus | Guinea pig | Feb. 2008 (Broad/cavPor3) | Broad Institute cavPor3 | 2009-08-15 | 2009-08-15 | 2009-09-02 | 43.680% |
| 49 | conCri1 | Condylura cristata | Star-nosed mole | 14-Mar-2012 (GCA_000260355.1) | Broad Institute/ConCri1.0 | 2013-07-09 | 2013-07-09 | 2013-07-10 | 37.034% |
| 50 | ochPri3 | Ochotona princeps | Pika | May 2012 (OchPri3.0/ochPri3) | Broad Institute | 2013-06-20 | 2013-06-18 | 2013-06-18 | 34.676% |
| 51 | eriEur2 | Erinaceus europaeus | Hedgehog | May 2012 (EriEur2.0/eriEur2) | Broad Institute EriEur2.0 | 2013-06-12 | 2013-06-07 | 2013-07-09 | 26.149% |
| 52 | echTel2 | Echinops telfairi | Tenrec | Nov. 2012 (Broad/echTel2) | Broad/EchTel2.0 | 2013-05-30 | 2013-05-30 | 2013-06-17 | 30.135% |
| 53 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2012-03-07 | 35.249% |
| 54 | rn5 | Rattus norvegicus | Rat | Mar. 2012 (RGSC 5.0/rn5) | RGSC Rnor_5.0 (GCA_000001895.3) | 2012-03-21 | 2012-03-21 | 2012-06-27 | 31.662% |
| 55 | criGri1 | Cricetulus griseus | Chinese Hamster | 12-Jul-2013 (GCA_000419365.1) | Beijing Genomics Institution-shenzhen/C_griseus_v1.0 | N/A | N/A | N/A | N/A |
| 56 | mesAur1 | Mesocricetus auratus | golden hamster | 29-Mar-2013 (GCA_000349665.1) | Broad Institute/MesAur1.0 | N/A | N/A | N/A | N/A |
| 57 | micOch1 | Microtus ochrogaster | Prairie Vole | 31-Oct-2012 (GCA_000317375.1) | Broad Institute/MicOch1.0 | N/A | N/A | N/A | N/A |
| 58 | sorAra2 | Sorex araneus | Shrew | Aug. 2008 (Broad/sorAra2) | Broad Institute SorAra2.0 | 2013-05-29 | 2013-05-29 | 2013-06-18 | 27.681% |
| 59 | macEug2 | Macropus eugenii | Wallaby | Sep. 2009 (TWGS Meug_1.1/macEug2) | TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) | 2010-11-05 | 2011-12-02 | 2013-07-11 | 6.534% |
| 60 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2009-09-02 | 14.358% |
| 61 | cheMyd1 | Chelonia mydas | green seaturtle | 18-Mar-2013 (GCA_000344595.1) | BGI/CheMyd_1.0 | N/A | N/A | N/A | N/A |
| 62 | sarHar1 | Sarcophilus harrisii | Tasmanian devil | Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) | Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) | 2012-02-02 | 2012-02-08 | 2013-07-10 | 7.414% |
| 63 | chrPic1 | Chrysemys picta bellii | Painted turtle | Dec. 2011 (v3.0.1/chrPic1) | International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1) | 2012-03-27 | 2012-03-29 | N/A | N/A |
| 64 | apaSpi1 | Apalone spinifera | spiny softshell turtle | 03-May-2013 (GCA_000385615.1) | WUGSC/ASM38561v1 | N/A | N/A | N/A | N/A |
| 65 | pelSin1 | Pelodiscus sinensis | Soft-shell Turtle | 01-Oct-2011 (GCA_000230535.1) | Soft-shell Turtle Genome Consortium/PelSin_1.0 | 2013-07-01 | 2013-07-01 | N/A | N/A |
| 66 | ornAna1 | Ornithorhynchus anatinus | Platypus | Mar. 2007 (WUGSC 5.0.1/ornAna1) | WUSTL version 5.0.1 | 2009-08-15 | 2013-06-22 | 2009-09-02 | 7.627% |
| 67 | colLiv1 | Columba livia | Rock pigeon | 11-Feb-2013 (GCA_000337935.1) | BGI/Cliv_1.0 | 2013-06-27 | 2013-06-27 | 2013-06-29 | 3.683% |
| 68 | falChe1 | Falco cherrug | Saker falcon | 05-Feb-2013 (GCA_000337975.1) | BGI/F_cherrug_v1.0 | 2013-06-27 | 2013-06-27 | 2013-06-27 | 3.812% |
| 69 | falPer1 | Falco peregrinus | peregrine falcon | 05-Feb-2013 (GCA_000337955.1) | BGI/F_peregrinus_v1.0 | 2013-06-28 | 2013-06-28 | 2013-06-27 | 3.879% |
| 70 | allMis1 | Alligator mississippiensis | American alligator | Aug. 2012 (allMis0.2/allMis1) | International Crocodilian Genomes Working Group | 2013-06-07 | 2012-08-28 | 2013-06-28 | 7.084% |
| 71 | anaPla1 | Anas platyrhynchos | Mallard duck | 26-Apr-2013 (GCA_000355885.1) | State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing/BGI_duck_1.0 | 2013-06-27 | 2013-06-27 | 2013-06-27 | 3.509% |
| 72 | galGal4 | Gallus gallus | Chicken | Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) | ICGSC Gallus_gallus-4.0 (GCA_000002315.2) | 2012-01-04 | 2012-01-04 | 2013-06-29 | 3.684% |
| 73 | melGal1 | Meleagris gallopavo | Turkey | Dec. 2009 (TGC Turkey_2.01/melGal1) | TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) | 2010-11-04 | 2013-06-21 | 2011-03-28 | 2.645% |
| 74 | amaVit1 | Amazona vittata | Parrot | Jan. 2013 (AV1/amaVit1) | Puerto Rican Parrot Genome Project AV1 | 2013-03-27 | 2013-03-27 | 2013-06-28 | 3.298% |
| 75 | araMac1 | Ara macao | Scarlet Macaw | 26-Jun-2013 (GCA_000400695.1) | Texas A&M University/SMACv1.1 | 2013-06-28 | 2013-06-28 | 2013-06-29 | 2.912% |
| 76 | melUnd1 | Melopsittacus undulatus | Budgerigar | Sep. 2011 (WUSTL v6.3/melUnd1) | WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) | 2012-03-27 | 2012-03-28 | 2013-06-27 | 3.577% |
| 77 | ficAlb2 | Ficedula albicollis | Collared Flycatcher | 27-Jun-2013 (GCA_000247815.2) | Uppsala University/FicAlb1.5 | 2013-06-29 | 2013-06-29 | 2013-06-29 | 3.715% |
| 78 | anoCar2 | Anolis carolinensis | Lizard | May 2010 (Broad AnoCar2.0/anoCar2) | Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) | 2011-04-12 | 2011-04-13 | 2011-04-19 | 3.552% |
| 79 | taeGut2 | Taeniopygia guttata | Zebra finch | Feb. 2013 (WashU taeGut324/taeGut2) | Washington University School of Medicine | 2013-06-05 | 2013-06-05 | 2013-06-17 | 5.321% |
| 80 | pseHum1 | Pseudopodoces humilis | Tibetan ground jay | 11-Jan-2013 (GCA_000331425.1) | Beijing Genomics Institute (BGI)-Shenzhen/PseHum1.0 | 2013-06-27 | 2013-06-27 | 2013-06-29 | 3.982% |
| 81 | geoFor1 | Geospiza fortis | Medium ground finch | Apr. 2012 (GeoFor_1.0/geoFor1) | Beijing Genomics Institute | 2012-07-26 | 2012-07-26 | 2012-07-29 | 3.503% |
| 82 | zonAlb1 | Zonotrichia albicollis | White-throated sparrow | 30-Apr-2013 (GCA_000385455.1) | White-throated sparrow consortium/ASM38545v1 | 2013-06-26 | 2013-06-26 | 2013-06-26 | 3.476% |
| 83 | lepOcu1 | Lepisosteus oculatus | Spotted Gar | 02-Dec-2011 (GCA_000242695.1) | Broad Institute of MIT and Harvard/LepOcu1 | N/A | N/A | N/A | N/A |
| 84 | xenTro7 | Xenopus tropicalis | X. tropicalis | Sep. 2012 (JGI 7.0/xenTro7) | US DOE Joint Genome Institute (JGI-PGF) | 2013-06-21 | 2013-06-14 | N/A | N/A |
| 85 | latCha1 | Latimeria chalumnae | Coelacanth | Aug. 2011 (Broad/latCha1) | Broad LatCha1 (GCA_000225785.1) | 2012-01-11 | 2012-01-12 | 2013-07-16 | 2.749% |
| 86 | gadMor1 | Gadus morhua | Atlantic cod | May 2010 (Genofisk GadMor_May2010/gadMor1) | Genofisk GadMor_May2010 (GCA_000231765.1) | 2011-12-29 | 2012-01-04 | N/A | N/A |
| 87 | neoBri1 | Neolamprologus brichardi | Princess of Burundi | 31-May-2011 (GCA_000239395.1) | Broad Institute of MIT and Harvard/NeoBri1.0 | N/A | N/A | N/A | N/A |
| 88 | oreNil2 | Oreochromis niloticus | Nile tilapia | Jan. 2011 (Broad oreNil1.1/oreNil2) | Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1) | 2012-04-10 | 2012-04-11 | N/A | N/A |
| 89 | gasAcu1 | Gasterosteus aculeatus | Stickleback | Feb. 2006 (Broad/gasAcu1) | Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) | 2009-08-15 | 2009-08-15 | 2009-09-02 | 1.916% |
| 90 | tetNig2 | Tetraodon nigroviridis | Tetraodon | Mar. 2007 (Genoscope 8.0/tetNig2) | Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) | 2010-06-07 | 2009-09-02 | 2009-09-02 | 1.712% |
| 91 | hapBur1 | Haplochromis burtoni | Burton's mouthbreeder | 12-Oct-2011 (GCA_000239415.1) | Broad Institute of MIT and Harvard/AstBur1.0 | N/A | N/A | N/A | N/A |
| 92 | takFla1 | Takifugu flavidus | Tawny puffer fish | 30-May-2013 (GCA_000400755.1) | IOCAS/version 1 of Takifugu flavidus genome | N/A | N/A | N/A | N/A |
| 93 | mayZeb1 | Maylandia zebra | a cichlid fish | 08-Mar-2012 (GCA_000238955.2) | Broad Institute/MetZeb1.1 | N/A | N/A | N/A | N/A |
| 94 | punNye1 | Pundamilia nyererei | a cichlid fish | 12-Oct-2011 (GCA_000239375.1) | Broad Institute of MIT and Harvard/PunNye1.0 | N/A | N/A | N/A | N/A |
| 95 | fr3 | Takifugu rubripes | Fugu | Oct. 2011 (FUGU5/fr3) | Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) | 2011-11-16 | 2011-11-17 | N/A | N/A |
| 96 | astMex1 | Astyanax mexicanus | Mexican tetra (cavefish) | 23-Apr-2013 (GCA_000372685.1) | Aquatic Genome Models/Astyanax_mexicanus-1.0.2 | N/A | N/A | N/A | N/A |
| 97 | danRer7 | Danio rerio | Zebrafish | Jul. 2010 (Zv9/danRer7) | Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) | 2010-12-03 | 2013-06-21 | 2010-12-18 | 2.790% |
| 98 | oryLat2 | Oryzias latipes | Medaka | Oct. 2005 (NIG/UT MEDAKA1/oryLat2) | NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) | 2009-08-15 | 2009-08-15 | 2009-09-02 | 1.849% |
| 99 | xipMac1 | Xiphophorus maculatus | southern platyfish | 02-Jan-2012 (GCA_000241075.1) | Washington University School of Medicine/Xiphophorus_maculatus-4.4.2 | 2013-07-01 | 2013-07-01 | N/A | N/A |
| 100 | petMar2 | Petromyzon marinus | Lamprey | Sep. 2010 (WUGSC 7.0/petMar2) | GSC Washington University School of Medicine | 2012-10-12 | 2012-10-12 | 2012-10-17 | 1.046% |
