TarSyr2 20-way conservation lastz parameters
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See Also
- Tarsier 20-way TarSyr2 20-way Genome size statistics
- Tarsier 20-way TarSyr2 20-way conservation alignment
- all other UCSC Multiple Alignments
| The default scoring matrix is: | The HoxD55 scoring matrix is: | The human-chimp.v2 scoring matrix is: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
O=400 E=30 |
O=400 E=30 |
O=600 E=150 |
do not edit, automatically generated table
| query | abridged repeats(no) |
M(0) | K(3000) | L(3000) | Q | Y(9400) | program run | E(30) | H(0) | O(400) | T(1) | chain table date |
% of tarSyr2 matched (chainLink table) |
% of query matched (chainLinkTarSyr2) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Squirrel monkey saiBol1 | no | 50 | 3000 | 3000 | saiBol1.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-15 | 48.208% | 59.766% |
| Marmoset calJac3 | no | 50 | 3000 | 3000 | calJac3.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-13 | 48.629% | 55.800% |
| Gorilla gorGor3 | no | 50 | 3000 | 3000 | gorGor3.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-13 | 50.262% | 56.297% |
| Gibbon nomLeu3 | no | 50 | 3000 | 3000 | nomLeu3.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-13 | 50.545% | 56.775% |
| Orangutan ponAbe2 | no | 50 | 3000 | 3000 | ponAbe2.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-13 | 51.302% | 55.431% |
| Human hg38 | no | 50 | 3000 | 3000 | hg38.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-13 | 52.305% | 56.022% |
| Bonobo panPan1 | no | 50 | 3000 | 3000 | panPan1.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-16 | 52.289% | 59.834% |
| Chimp panTro4 | no | 50 | 3000 | 3000 | panTro4.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-15 | 51.284% | 56.630% |
| Proboscis monkey nasLar1 | no | 50 | 3000 | 3000 | nasLar1.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-16 | 47.164% | 61.165% |
| Golden snub-nosed monkey rhiRox1 | no | 50 | 3000 | 3000 | rhiRox1.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2015-02-24 | 51.539% | 56.545% |
| Crab-eating macaque macFas5 | no | 50 | 3000 | 3000 | macFas5.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-16 | 51.814% | 57.176% |
| Rhesus rheMac3 | no | 50 | 3000 | 3000 | rheMac3.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-16 | 50.710% | 59.428% |
| Baboon papAnu2 | no | 50 | 3000 | 3000 | papAnu2.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-15 | 51.652% | 56.346% |
| Green monkey chlSab2 | no | 50 | 3000 | 3000 | chlSab2.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-16 | 51.691% | 58.191% |
| Mouse lemur micMur1 | no | 50 | 3000 | 3000 | micMur1.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-13 | 38.087% | 64.649% |
| Bushbaby otoGar3 | no | 50 | 3000 | 3000 | otoGar3.tarSyr2.tuning.Q.txt | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 2 | 2014-12-15 | 44.814% | 59.044% |
| Dog canFam3 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-05 | 44.555% | 57.932% |
| Tree shrew tupBel1 | no | 50 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-02 | 31.268% | 47.221% |
| Mouse mm10 | no | 0 | 3000 | 3000 | default | 9400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-04-02 | 26.433% | 32.301% |
