Dm6 27-way Genome size statistics

see also

• D. melanogaster 27-way Dm6 27-way conservation alignment
• D. melanogaster 27-way Dm6 27-way conservation lastz parameters
• all other UCSC Multiple Alignments

statistics collected from UCSC 2bit files

• The external link in the first column goes to the FTP location where the genome sequence was obtained
• The external links from the UCSC database name go to the UCSC genome-preview browser for that genome
• N bases == unknown bases in the assembly marked by "N"
• non-N bases == called bases in the assembly
• total size == all bases in assembly, N and non-N
• The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
• The common name external links go to information pages for this genome
• The coverage numbers are taken directly from information README files from the sequencing center
• The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order count/ ftp src	ucsc db name/ genome-preview	chrom count	total size	non-N bases	N base count	% masked	common name/ src info	coverage	N50 chrom.sizes	alignment type	% of dm6 matched (chainLink table)	chain minScore	chain linearGap
[N/A 01]	dm6	1,870	143,726,002	142,573,024	1,152,978	% 21.07	[N/A D. melanogaster]		25286936	N/A	N/A	N/A	N/A
[N/A 02]	droSec1	14,730	166,577,145	157,238,575	9,338,570	% 21.33	[N/A D. sechellia]		2123299	SyntenicNet	82.561%	3000	loose
[N/A 03]	droSim1	18	142,420,719	127,253,507	15,167,212	% 11.96	[N/A D. simulans]		22036055	SyntenicNet	80.042%	3000	loose
[N/A 04]	droEre2	5,124	152,712,140	145,084,019	7,628,121	% 13.05	[N/A D. erecta]		18748788	SyntenicNet	80.023%	3000	loose
05	droYak3	8,123	165,709,965	162,597,893	3,112,072	% 24.51	[N/A D. yakuba]		21770863	SyntenicNet	80.562%	3000	loose
06	droBia2	5,523	169,378,599	168,601,554	777,045	% 26.62	[N/A D. biarmipes]		3386121	SyntenicNet	75.042%	3000	loose
07	droSuz1	8,680	232,923,092	202,303,443	30,619,649	% 27.75	[N/A D. suzukii]		388966	SyntenicNet	74.591%	3000	loose
[N/A 08]	droAna3	13,749	230,993,012	213,918,817	17,074,195	% 16.65	[N/A D. ananassae]		4599533	SyntenicNet	67.282%	3000	loose
09	droBip2	5,500	167,263,958	166,410,816	853,142	% 29.82	[N/A D. bipectinata]		663995	SyntenicNet	65.865%	3000	loose
10	droEug2	4,946	156,942,009	156,326,779	615,230	% 26.40	[N/A D. eugracilis]		976885	SyntenicNet	75.265%	3000	loose
11	droEle2	5,429	171,267,669	170,533,328	734,341	% 28.44	[N/A D. elegans]		1714184	SyntenicNet	75.445%	3000	loose
12	droKik2	5,141	164,292,578	163,450,299	842,279	% 30.05	[N/A D. kikkawai]		903682	SyntenicNet	70.590%	3000	loose
13	droTak2	5,733	182,106,768	181,031,534	1,075,234	% 33.38	[N/A D. takahashii]		387676	SyntenicNet	75.507%	3000	loose
14	droRho2	22,819	197,375,704	193,888,469	3,487,235	% 30.85	[N/A D. rhopaloa]		45514	SyntenicNet	74.940%	3000	loose
15	droFic2	5,754	152,439,475	151,050,198	1,389,277	% 25.24	[N/A D. ficusphila]		1050541	SyntenicNet	74.740%	3000	loose
16	droMir2	6	136,728,780	132,558,069	4,170,711	% 25.35	[N/A D. miranda]		28826359	SyntenicNet	59.308%	3000	loose
17	droWil2	14,838	235,516,348	223,610,028	11,906,320	% 36.41	[N/A D. willistoni]		4511350	SyntenicNet	51.432%	3000	loose
[N/A 18]	droPer1	12,838	188,374,079	175,583,556	12,790,523	% 14.60	[N/A D. persimilis]		1869541	SyntenicNet	59.049%	3000	loose
19	droPse3	4,791	152,711,298	149,042,033	3,669,265	% 25.23	[N/A D. pseudoobscura]		12541198	SyntenicNet	59.836%	3000	loose
[N/A 20]	droGri2	17,440	200,467,819	186,090,669	14,377,150	% 13.64	[N/A D. grimshawi]		8399593	SyntenicNet	50.979%	3000	loose
21	musDom2	20,487	750,416,349	691,732,557	58,683,792	% 57.08	[N/A M. domestica]		226573	Net	19.278%	3000	loose
[N/A 22]	anoGam1	7	287,805,703	263,156,584	24,649,119	% 8.42	[N/A A. gambiae]		53272125	Net	14.452%	3000	loose
23	droAlb1	26,354	253,560,284	215,790,107	37,770,177	% 33.05	[N/A D. albomicans]		23589	SyntenicNet	44.544%	3000	loose
[ 24]	apiMel4	5,321	250,287,000	229,121,901	21,165,099	% 45.35	A. mellifera		13219345	Net	8.183%	3000	loose
[N/A 25]	droMoj3	6,841	193,826,310	180,207,831	13,618,479	% 15.52	[N/A D. mojavensis]		24764193	SyntenicNet	50.132%	3000	loose
[N/A 26]	droVir3	13,530	206,026,697	189,205,863	16,820,834	% 18.73	[N/A D. virilis]		10161210	SyntenicNet	51.937%	3000	loose
[N/A 27]	triCas2	2,211	199,682,416	151,549,963	48,132,453	% 3.16	[N/A T. castaneum]		13894384	Net	14.092%	3000	loose