Dm6 27-way conservation lastz parameters

See Also

• D. melanogaster 27-way Dm6 27-way Genome size statistics
• D. melanogaster 27-way Dm6 27-way conservation alignment
• all other UCSC Multiple Alignments

The default scoring matrix is:		The HoxD55 scoring matrix is:		The human-chimp.v2 scoring matrix is:
A C G T A 91 -114 -31 -123 C -114 100 -125 -31 G -31 -125 100 -114 T -123 -31 -114 91 O=400 E=30		A C G T A 91 -90 -25 -100 C -90 100 -100 -25 G -25 -100 100 -90 T -100 -25 -90 91 O=400 E=30		A C G T A 90 -330 -236 -356 C -330 100 -318 -236 G -236 -318 100 -330 T -356 -236 -330 90 O=600 E=150

do not edit, automatically generated table

query	abridged repeats(no)	M(0)	K(3000)	L(3000)	Q	Y(9400)	program run	E(30)	H(0)	O(400)	T(1)	chain table date	% of dm6 matched (chainLink table)	% of query matched (chainLinkDm6)
D. sechellia droSec1	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	82.561%	81.572%
D. simulans droSim1	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	80.042%	89.329%
D. erecta droEre2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	80.023%	84.386%
D. yakuba droYak3	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	80.562%	80.965%
D. biarmipes droBia2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	75.042%	67.383%
D. suzukii droSuz1	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	74.591%	64.198%
D. ananassae droAna3	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	67.282%	58.760%
D. bipectinata droBip2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	65.865%	60.253%
D. eugracilis droEug2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	75.265%	73.292%
D. elegans droEle2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	75.445%	67.566%
D. kikkawai droKik2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	70.590%	64.708%
D. takahashii droTak2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	75.507%	63.519%
D. rhopaloa droRho2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	74.940%	65.415%
D. ficusphila droFic2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	74.740%	74.403%
D. miranda droMir2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	59.308%	63.646%
D. willistoni droWil2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	51.432%	40.432%
D. persimilis droPer1	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	59.049%	52.949%
D. pseudoobscura droPse3	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	59.836%	59.839%
D. grimshawi droGri2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	50.979%	42.814%
M. domestica musDom2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	19.278%	4.861%
A. gambiae anoGam1	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	14.452%	7.962%
D. albomicans droAlb1	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	44.544%	38.217%
A. mellifera apiMel4	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	8.183%	5.360%
D. mojavensis droMoj3	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	50.132%	41.385%
D. virilis droVir3	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	51.937%	43.828%
T. castaneum triCas2	no	0	2200	4000	HoxD55.q	3400	lastz-distrib-1.03.52/bin/lastz	30	2000	400	1	2014-08-29	14.092%	14.808%