Dm6 124-way Genome size statistics

statistics collected from UCSC 2bit files

The external link in the first column goes to the FTP location where the genome sequence was obtained
The external links from the UCSC database name go to the UCSC genome-preview browser for that genome
N bases == unknown bases in the assembly marked by "N"
non-N bases == called bases in the assembly
total size == all bases in assembly, N and non-N
The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
The common name external links go to information pages for this genome
The coverage numbers are taken directly from information README files from the sequencing center
The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order count/ ftp src	ucsc db name/ genome-preview	chrom count	total size	non-N bases	N base count	% masked	common name/ src info	coverage	N50 chrom.sizes	alignment type	% of dm6 matched (chainLink table)	chain minScore	chain linearGap
01	dm6	1,870	143,726,002	142,573,024	1,152,978	% 21.07	D. melanogaster		25286936	N/A	98.737%	N/A	loose
02	Phortica_variegata	19,473	155,550,413	152,622,190	2,928,223	% 34.86	Phortica_variegata	14.9X	16703	Net	24.774%	1000	loose
03	Zaprionus_indianus	48,067	123,674,749	120,501,276	3,173,473	% 25.45	Zaprionus_indianus	36X	4855	Net	36.928%	1000	loose
04	Scaptodrosophila_lebanonensis	267	247,026,876	247,026,876	0	% 32.14	Scaptodrosophila_lebanonensis	100X	7853183	Net	42.552%	1000	loose
05	droRho2	22,819	197,375,704	193,888,469	3,487,235	% 30.85	D. rhopaloa	214.5X	45514	Net	74.940%	3000	loose
06	droBia2	5,523	169,378,599	168,601,554	777,045	% 26.62	D. biarmipes	186.9X	3386121	SyntenicNet	75.042%	3000	loose
07	D_novamexicana	292	182,212,895	182,212,895	0	% 32.08	D_novamexicana	165X	3154395	SyntenicNet	48.568%	1000	loose
08	D_nasuta	46,105	137,224,182	134,313,172	2,911,010	% 30.04	D_nasuta	55X	5692	Net	39.549%	1000	loose
09	droBip2	5,500	167,263,958	166,410,816	853,142	% 29.82	D. bipectinata	266.3X	663995	Net	65.865%	3000	loose
10	D_montana	63,742	183,585,048	174,947,209	8,637,839	% 27.35	D_montana	40X	40647	Net	45.270%	1000	loose
11	D_americana	24,251	163,286,826	162,554,589	732,237	% 27.87	D_americana	60X	20926	Net	45.382%	1000	loose
12	droKik2	5,141	164,292,578	163,450,299	842,279	% 30.05	D. kikkawai	181.7X	903682	Net	70.590%	3000	loose
13	droFic2	5,754	152,439,475	151,050,198	1,389,277	% 25.24	D. ficusphila	208.7X	1050541	Net	74.740%	3000	loose
14	droEle2	5,429	171,267,669	170,533,328	734,341	% 28.44	D. elegans	204.9X	1714184	Net	75.445%	3000	loose
15	D_busckii	6	135,748,557	124,583,186	11,165,371	% 33.85	D_busckii	172.9X	26871514	SyntenicNet	42.220%	1000	loose
16	droTak2	5,733	182,106,768	181,031,534	1,075,234	% 33.38	D. takahashii	242.1X	387676	Net	75.507%	3000	loose
17	droEug2	4,946	156,942,009	156,326,779	615,230	% 26.40	D. eugracilis	218.1X	976885	Net	75.265%	3000	loose
18	droSuz1	8,680	232,923,092	202,303,443	30,619,649	% 27.75	D. suzukii	195X	388966	Net	74.591%	3000	loose
19	droAlb1	26,354	253,560,284	215,790,107	37,770,177	% 33.05	D. albomicans	100X	23589	Net	44.544%	3000	loose
20	D_obscura	1,935	181,868,570	173,179,687	8,688,883	% 25.96	D_obscura	425X	472512	Net	61.561%	1000	loose
21	D_serrata	1,356	198,035,861	198,035,861	0	% 35.57	D_serrata	63X	942627	Net	70.419%	1000	loose
22	D_arizonae	3,178	141,386,800	134,579,230	6,807,570	% 30.82	D_arizonae	52X	26536676	SyntenicNet	41.792%	1000	loose
23	droWil2	14,838	235,516,348	223,610,028	11,906,320	% 36.41	D. willistoni	8.4X	4511350	SyntenicNet	51.432%	3000	loose
24	D_athabasca	6	130,277,606	123,530,734	6,746,872	% 25.05	D_athabasca	30X	25589266	SyntenicNet	54.625%	1000	loose
25	droYak3	8,123	165,709,965	162,597,893	3,112,072	% 24.51	D. yakuba	9.1X	21770863	SyntenicNet	80.562%	3000	loose
[N/A 26]	droVir3	13,530	206,026,697	189,205,863	16,820,834	% 18.73	[N/A D. virilis]	8X	10161210	SyntenicNet	51.937%	3000	loose
27	D_subobscura	2,042	117,291,146	115,310,984	1,980,162	% 22.71	D_subobscura	37X	91130	Net	55.249%	1000	loose
28	droSim2	7,619	124,963,774	124,585,429	378,345	% 21.71	D. simulans	75X	23539531	SyntenicNet	82.570%	3000	loose
[N/A 29]	droSec1	14,730	166,577,145	157,238,575	9,338,570	% 21.33	[N/A D. sechellia]	4.9X	2123299	SyntenicNet	82.561%	3000	loose
30	droPse3	4,791	152,711,298	149,042,033	3,669,265	% 25.23	D. pseudoobscura	44X	12541198	SyntenicNet	59.836%	3000	loose
31	D_pseudoobscura_1	4,790	152,696,384	149,027,119	3,669,265	% 23.67	D_pseudoobscura_1	24 X	12541198	Net	59.426%	1000	loose
[N/A 32]	droPer1	12,838	188,374,079	175,583,556	12,790,523	% 14.60	[N/A D. persimilis]	4.1X	1869541	Net	59.049%	3000	loose
33	D_navojoa	8,053	115,885,644	114,818,944	1,066,700	% 30.77	D_navojoa	81X	21835025	SyntenicNet	36.286%	1000	loose
[N/A 34]	droMoj3	6,841	193,826,310	180,207,831	13,618,479	% 15.52	[N/A D. mojavensis]	8.2X	24764193	SyntenicNet	50.132%	3000	loose
35	droMir2	6	136,728,780	132,558,069	4,170,711	% 25.35	D. miranda	95X	28826359	SyntenicNet	59.308%	3000	loose
36	D_hydei	866	139,940,643	137,880,105	2,060,538	% 28.99	D_hydei	170X	754803	Net	45.605%	1000	loose
[N/A 37]	droGri2	17,440	200,467,819	186,090,669	14,377,150	% 13.64	[N/A D. grimshawi]	7.9X	8399593	SyntenicNet	50.979%	3000	loose
[N/A 38]	droEre2	5,124	152,712,140	145,084,019	7,628,121	% 13.05	[N/A D. erecta]	10.6X	18748788	SyntenicNet	80.023%	3000	loose
[N/A 39]	droAna3	13,749	230,993,012	213,918,817	17,074,195	% 16.65	[N/A D. ananassae]	8.9X	4599533	SyntenicNet	67.282%	3000	loose
[ 40]	apiMel4	5,321	250,287,000	229,121,901	21,165,099	% 45.35	A. mellifera		13219345	Net	8.183%	3000	loose
41	Trichoceridae_BV_2014	26,743	41,711,596	40,355,645	1,355,951	% 37.74	Trichoceridae_BV_2014	40X	1520	Net	3.974%	1000	loose
42	Proctacanthus_coquilletti	14,695	208,907,727	208,901,127	6,600	% 35.51	Proctacanthus_coquilletti	132X	862345	Net	14.594%	1000	loose
43	Holcocephala_fusca	133,294	516,230,974	410,754,649	105,476,325	% 41.12	Holcocephala_fusca	12.7X	5217	Net	10.901%	1000	loose
44	Cirrula_hians	172,401	399,685,866	361,055,023	38,630,843	% 37.21	Cirrula_hians	27X	2483	Net	12.751%	1000	loose
45	Ephydra_gracilis	61,434	410,872,512	367,026,881	43,845,631	% 34.53	Ephydra_gracilis	9.4X	11309	Net	16.643%	1000	loose
46	Condylostylus_patibulatus	211,317	451,941,653	339,265,009	112,676,644	% 51.78	Condylostylus_patibulatus	15.8X	2239	Net	8.158%	1000	loose
47	Eristalis_dimidiata	146,196	315,428,702	168,946,833	146,481,869	% 17.57	Eristalis_dimidiata	8X	2265	Net	9.259%	1000	loose
48	Paykullia_maculata	147,653	422,395,093	421,186,575	1,208,518	% 54.05	Paykullia_maculata	96X	7609	Net	19.655%	1000	loose
49	Hermetia_illucens	319,196	890,457,210	693,082,737	197,374,473	% 24.43	Hermetia_illucens	8.5X	3532	Net	11.575%	1000	loose
50	Tipula_oleracea	186,864	541,697,276	360,189,489	181,507,787	% 32.56	Tipula_oleracea	6.1X	3390	Net	8.632%	1000	loose
51	Themira_minor	33,166	99,885,510	92,589,053	7,296,457	% 22.44	Themira_minor	21.8X	3571	Net	14.206%	1000	loose
52	Mochlonyx_cinctipes	95,131	441,264,227	396,345,889	44,918,338	% 49.48	Mochlonyx_cinctipes	12.9X	6407	Net	11.607%	1000	loose
53	Chaoborus_trivitattus	80,757	269,281,158	225,218,005	44,063,153	% 55.51	Chaoborus_trivitattus	11.2X	4087	Net	8.821%	1000	loose
54	Liriomyza_trifolii	31,049	69,698,627	60,916,659	8,781,968	% 36.26	Liriomyza_trifolii	26X	2213	Net	9.358%	1000	loose
55	Coboldia_fuscipes	1,732	98,759,061	98,471,596	287,465	% 34.13	Coboldia_fuscipes	53X	242385	Net	11.908%	1000	loose
56	Culicoides_sonorensis	7,974	194,177,243	189,075,353	5,101,890	% 47.09	Culicoides_sonorensis	27X	89502	Net	11.882%	1000	loose
57	Sphyracephala_brevicornis	135,449	315,521,093	266,391,491	49,129,602	% 39.65	Sphyracephala_brevicornis	7.4X	2517	Net	14.969%	1000	loose
58	Teleopsis_dalmanni	25,142	621,706,043	621,310,649	395,394	% 41.54	Teleopsis_dalmanni	107.5X	66701	Net	23.293%	1000	loose
59	Megaselia_abdita	121,379	412,270,594	367,134,505	45,136,089	% 47.66	Megaselia_abdita	20.1X	4558	Net	13.126%	1000	loose
60	Megaselia_scalaris	231,041	489,347,612	303,723,334	185,624,278	% 42.05	Megaselia_scalaris		5716	Net	8.143%	1000	loose
61	Mayetiola_destructor	24,475	185,827,756	153,138,503	32,689,253	% 36.15	Mayetiola_destructor	34X	756041	Net	10.512%	1000	loose
62	Glossina_fuscipes	2,395	374,774,708	361,274,315	13,500,393	% 34.16	Glossina_fuscipes	120X	561190	Net	17.078%	1000	loose
63	Glossina_palpalis_gambiensis	3,926	380,104,241	346,046,687	34,057,554	% 33.31	Glossina_palpalis_gambiensis	138X	575037	Net	16.827%	1000	loose
64	Glossina_brevipalpis	1,651	315,360,362	293,464,648	21,895,714	% 39.57	Glossina_brevipalpis	81X	1209507	Net	17.022%	1000	loose
65	Glossina_pallidipes	1,726	357,332,231	351,918,494	5,413,737	% 33.37	Glossina_pallidipes	78X	1038751	Net	17.101%	1000	loose
66	Glossina_austeni	2,205	370,264,922	353,470,954	16,793,968	% 34.37	Glossina_austeni	62X	812585	Net	16.948%	1000	loose
67	Glossina_morsitans_2	24,071	363,107,242	363,107,242	0	% 33.60	Glossina_morsitans_2		49769	Net	16.954%	1000	loose
68	Glossina_morsitans_1	32,924	348,062,779	335,305,907	12,756,872	% 32.41	Glossina_morsitans_1	13.9X	20491	Net	15.733%	1000	loose
69	Sarcophagidae_BV_2014	287,425	494,580,772	425,372,192	69,208,580	% 45.93	Sarcophagidae_BV_2014	16.4X	1715	Net	10.061%	1000	loose
70	Neobellieria_bullata	184,347	396,224,597	379,790,714	16,433,883	% 37.56	Neobellieria_bullata	34X	2219	Net	11.431%	1000	loose
71	Phormia_regina	192,460	549,932,840	541,284,364	8,648,476	% 56.85	Phormia_regina	44X	7927	Net	20.199%	1000	loose
72	Lucilia_sericata	92,075	319,935,455	270,204,707	49,730,748	% 45.25	Lucilia_sericata	8.5X	4679	Net	15.766%	1000	loose
73	Lucilia_cuprina	5,858	378,290,214	374,710,711	3,579,503	% 50.16	Lucilia_cuprina	158.3X	275862	Net	20.785%	1000	loose
74	Calliphora_vicina	197,510	459,231,066	328,533,602	130,697,464	% 41.41	Calliphora_vicina	10.4X	2418	Net	15.621%	1000	loose
75	Stomoxys_calcitrans	12,042	971,188,624	820,659,366	150,529,258	% 56.94	Stomoxys_calcitrans	66X	504651	Net	18.152%	1000	loose
76	musDom2	20,487	750,416,349	691,732,557	58,683,792	% 57.08	M. domestica	76X	226573	Net	19.278%	3000	loose
77	Haematobia_irritans	76,616	1,143,537,531	603,547,513	539,990,018	% 48.79	Haematobia_irritans	1X	23099	Net	14.236%	1000	loose
78	Trupanea_jonesi	66,952	97,281,263	81,013,243	16,268,020	% 26.44	Trupanea_jonesi	8.4X	1424	Net	7.450%	1000	loose
79	Eutreta_diana	139,046	233,053,157	174,775,853	58,277,304	% 25.67	Eutreta_diana	5.2X	1675	Net	11.427%	1000	loose
80	Tephritis_californica	183,295	342,257,700	272,506,508	69,751,192	% 30.68	Tephritis_californica	9.1X	1969	Net	12.995%	1000	loose
81	Rhagoletis_zephyria	86,670	1,113,962,544	1,045,098,753	68,863,791	% 45.05	Rhagoletis_zephyria	35X	62643	Net	21.196%	1000	loose
82	Zeugodacus_cucurbitae	5,572	374,820,345	316,281,465	58,538,880	% 36.97	Zeugodacus_cucurbitae	66.2X	1399015	Net	20.252%	1000	loose
83	Bactrocera_latifrons	3,306	462,505,359	431,224,478	31,280,881	% 35.57	Bactrocera_latifrons	101X	974427	Net	20.469%	1000	loose
84	Bactrocera_oleae	36,198	471,780,370	420,573,776	51,206,594	% 37.62	Bactrocera_oleae	50X	139566	Net	20.400%	1000	loose
85	Bactrocera_tryoni	31,960	519,005,690	404,599,357	114,406,333	% 37.41	Bactrocera_tryoni	96X	69551	Net	19.523%	1000	loose
86	Bactrocera_dorsalis	7,166	414,984,608	298,647,366	116,337,242	% 32.02	Bactrocera_dorsalis	70X	1206000	Net	19.222%	1000	loose
87	Ceratitis_capitata	2,355	436,490,799	435,785,331	705,468	% 39.93	Ceratitis_capitata	152.5X	1665634	Net	19.997%	1000	loose
88	Clogmia_albipunctata	42,886	256,248,749	246,743,069	9,505,680	% 43.24	Clogmia_albipunctata	17.8X	13081	Net	12.098%	1000	loose
89	Phlebotomus_papatasi	106,826	363,767,980	345,389,541	18,378,439	% 45.25	Phlebotomus_papatasi	15.1X	27956	Net	12.066%	1000	loose
90	Lutzomyia_longipalpis	11,532	154,229,266	142,771,332	11,457,934	% 36.09	Lutzomyia_longipalpis	38.9X	85093	Net	10.883%	1000	loose
91	Culex_quinquefasciatus	3,171	579,042,118	539,959,374	39,082,744	% 53.31	Culex_quinquefasciatus		486756	Net	13.421%	1000	loose
92	A_coluzzii	10,521	224,417,174	209,529,067	14,888,107	% 20.43	A_coluzzii	8X	4437438	Net	12.160%	1000	loose
93	A_epiroticus	2,673	223,486,714	202,632,179	20,854,535	% 18.82	A_epiroticus	49X	366526	Net	12.650%	1000	loose
94	A_nili	51,048	98,320,046	98,174,933	145,113	% 13.72	A_nili	0.4X	2577	Net	9.202%	1000	loose
95	A_culicifacies	16,162	202,998,806	187,158,781	15,840,025	% 18.38	A_culicifacies	31X	22320	Net	11.996%	1000	loose
96	A_cracens	34,365	326,465,827	325,760,517	705,310	% 17.26	A_cracens	212.09X	153896	Net	11.692%	1000	loose
97	A_minimus	678	201,793,324	186,406,809	15,386,515	% 18.24	A_minimus	211X	10313149	Net	12.353%	1000	loose
98	A_sinensis	9,592	220,777,669	214,509,976	6,267,693	% 18.43	A_sinensis	30X	814231	Net	12.718%	1000	loose
99	A_maculatus	50,590	462,688,933	441,164,621	21,524,312	% 19.04	A_maculatus	93.21X	198528	Net	13.114%	1000	loose
100	A_farauti	310	183,103,254	175,822,780	7,280,474	% 18.58	A_farauti	233X	12895223	Net	12.374%	1000	loose
101	A_funestus	1,392	225,223,604	190,015,440	35,208,164	% 20.93	A_funestus	135X	671960	Net	12.236%	1000	loose
102	A_farauti_No4	14,407	146,379,160	146,379,155	5	% 18.16	A_farauti_No4	131X	16229	Net	11.042%	1000	loose
103	A_darlingi	2,220	136,935,538	136,907,773	27,765	% 16.78	A_darlingi	20X	115072	Net	11.465%	1000	loose
104	A_christyi	30,369	172,658,580	169,987,185	2,671,395	% 19.17	A_christyi	35X	9057	Net	11.794%	1000	loose
105	A_aquasalis	16,504	162,944,031	162,357,109	586,922	% 16.95	A_aquasalis	340X	53365	Net	11.625%	1000	loose
106	A_atroparvus	1,371	224,290,125	188,952,560	35,337,565	% 15.90	A_atroparvus	98X	9206694	Net	12.705%	1000	loose
107	A_quadriannulatus	2,823	283,828,998	208,966,669	74,862,329	% 20.09	A_quadriannulatus	93X	1641272	Net	12.514%	1000	loose
108	A_melas	20,229	224,162,116	203,428,649	20,733,467	% 19.89	A_melas	147X	18103	Net	12.182%	1000	loose
109	A_stephensi	227	196,058,862	181,678,847	14,380,015	% 17.59	A_stephensi	1X	37522140	Net	11.913%	1000	loose
110	A_punctulatus	20,774	146,157,495	146,157,493	2	% 18.12	A_punctulatus	50X	10256	Net	10.686%	1000	loose
111	A_merus	2,027	288,048,996	217,320,349	70,728,647	% 20.13	A_merus	147X	1489982	Net	12.901%	1000	loose
112	A_koliensis	41,925	151,110,088	151,110,062	26	% 18.49	A_koliensis	39X	4659	Net	10.841%	1000	loose
113	A_arabiensis	1,214	246,567,867	211,443,117	35,124,750	% 19.98	A_arabiensis	100X	5604218	Net	12.738%	1000	loose
114	A_dirus	1,266	216,307,690	197,741,572	18,566,118	% 17.15	A_dirus	184X	6906475	Net	12.779%	1000	loose
115	A_albimanus	201	173,339,239	163,494,474	9,844,765	% 15.54	A_albimanus	95X	37976048	Net	11.850%	1000	loose
116	anoGam3	8,041	264,974,304	252,401,356	12,572,948	% 14.28	A. gambiae	6.5X	49364325	Net	13.776%	3000	loose
117	A_gambiae_1	8,090	265,027,044	252,454,096	12,572,948	% 21.75	A_gambiae_1		49364325	Net	13.328%	1000	loose
118	Aedes_albopictus	2,435	2,247,306,217	2,247,306,217	0	% 56.63	Aedes_albopictus	80X	3303944	Net	15.172%	1000	loose
119	Aedes_aegypti	2,310	1,278,732,104	1,278,709,169	22,935	% 49.04	Aedes_aegypti	110X	409777670	Net	14.028%	1000	loose
120	Clunio_marinus	23,763	85,491,412	84,365,936	1,125,476	% 30.83	Clunio_marinus	140X	1871155	Net	10.684%	1000	loose
121	Belgica_antarctica	4,997	89,583,723	88,894,437	689,286	% 21.30	Belgica_antarctica	150X	98263	Net	10.737%	1000	loose
122	Chironomus_riparius	29,677	154,533,842	150,702,381	3,831,461	% 34.64	Chironomus_riparius	17.5X	9868	Net	9.683%	1000	loose
123	Chironomus_tentans	26,025	213,462,749	179,550,640	33,912,109	% 38.84	Chironomus_tentans	50X	57274	Net	9.943%	1000	loose
[N/A 124]	triCas2	2,211	199,682,416	151,549,963	48,132,453	% 3.16	T. castaneum		13894384	Net	14.092%	3000	loose

Dm6 124-way Genome size statistics

see also

statistics collected from UCSC 2bit files

do not edit, automatically generated table

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