Dm6 124-way conservation lastz parameters

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See Also


The default
scoring matrix is:
  The HoxD55
scoring matrix is:
 The human-chimp.v2
scoring matrix is:
 ACGT
A91-114-31-123
C-114100-125-31
G-31-125100-114
T-123-31-11491

O=400 E=30

 
 ACGT
A91-90-25-100
C-90100-100-25
G-25-100100-90
T-100-25-9091

O=400 E=30

 
 ACGT
A90-330-236-356
C-330100-318-236
G-236-318100-330
T-356-236-33090

O=600 E=150

do not edit, automatically generated table

query abridged
repeats(no)
M(0)K(3000) L(3000)QY(9400) program
run
E(30)H(0) O(400)T(1) chain table
date
% of dm6
matched
(chainLink table)
% of query
matched
(chainLinkDm6)
D. simulans droSim2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2018-09-1282.570% 92.648%
D. sechellia droSec1 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2982.561% 81.572%
D. erecta droEre2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2980.023% 84.386%
D. yakuba droYak3 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2980.562% 80.965%
D. ficusphila droFic2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2974.740% 74.403%
D. eugracilis droEug2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2975.265% 73.292%
D. biarmipes droBia2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2975.042% 67.383%
D. suzukii droSuz1 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2974.591% 64.198%
D. takahashii droTak2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2975.507% 63.519%
D. elegans droEle2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2975.445% 67.566%
D. rhopaloa droRho2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2974.940% 65.415%
D_serrata no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1970.419% N/A
D. kikkawai droKik2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2970.590% 64.708%
D. ananassae droAna3 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2967.282% 58.760%
D. bipectinata droBip2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2965.865% 60.253%
D_americana no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1945.382% N/A
D_novamexicana no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1948.568% N/A
D. virilis droVir3 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2951.937% 43.828%
D_montana no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1945.270% N/A
D_arizonae no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1941.792% N/A
D. mojavensis droMoj3 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2950.132% 41.385%
D_navojoa no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1936.286% N/A
D_hydei no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1945.605% N/A
D_busckii no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1942.220% N/A
D. grimshawi droGri2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2950.979% 42.814%
D_athabasca no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1954.625% N/A
D_pseudoobscura_1 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1959.426% N/A
D. miranda droMir2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2959.308% 63.646%
D. persimilis droPer1 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2959.049% 52.949%
D. pseudoobscura droPse3 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2959.836% 59.839%
D_subobscura no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1955.249% N/A
D_obscura no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1961.561% N/A
Zaprionus_indianus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1936.928% N/A
D_nasuta no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1939.549% N/A
D. albomicans droAlb1 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2944.544% 38.217%
Scaptodrosophila_lebanonensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1942.552% N/A
Phortica_variegata no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1924.774% N/A
D. willistoni droWil2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2951.432% 40.432%
Liriomyza_trifolii no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-199.358% N/A
Eutreta_diana no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.427% N/A
Trupanea_jonesi no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-197.450% N/A
Tephritis_californica no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.995% N/A
Stomoxys_calcitrans no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1918.152% N/A
Trichoceridae_BV_2014 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-193.974% N/A
Proctacanthus_coquilletti no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1914.594% N/A
T. castaneum triCas2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2914.092% 14.808%
Chironomus_riparius no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-199.683% N/A
Chironomus_tentans no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-199.943% N/A
Clunio_marinus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1910.684% N/A
Lutzomyia_longipalpis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1910.883% N/A
Phlebotomus_papatasi no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.066% N/A
Coboldia_fuscipes no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.908% N/A
Mayetiola_destructor no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1910.512% N/A
Clogmia_albipunctata no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.098% N/A
A. mellifera apiMel4 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-298.183% 5.360%
Bactrocera_dorsalis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1919.222% N/A
Bactrocera_latifrons no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1920.469% N/A
Bactrocera_tryoni no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1919.523% N/A
Bactrocera_oleae no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1920.400% N/A
Zeugodacus_cucurbitae no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1920.252% N/A
Ceratitis_capitata no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1919.997% N/A
Cirrula_hians no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.751% N/A
Ephydra_gracilis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1916.643% N/A
Sphyracephala_brevicornis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1914.969% N/A
Glossina_austeni no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1916.948% N/A
Glossina_morsitans_1 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1915.733% N/A
Glossina_morsitans_2 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1916.954% N/A
Glossina_pallidipes no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1917.101% N/A
Glossina_fuscipes no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1917.078% N/A
Glossina_palpalis_gambiensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1916.827% N/A
Glossina_brevipalpis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1917.022% N/A
Neobellieria_bullata no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.431% N/A
Calliphora_vicina no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1915.621% N/A
Lucilia_cuprina no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1920.785% N/A
Lucilia_sericata no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1915.766% N/A
Condylostylus_patibulatus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-198.158% N/A
Phormia_regina no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1920.199% N/A
Sarcophagidae_BV_2014 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1910.061% N/A
Paykullia_maculata no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1919.655% N/A
Teleopsis_dalmanni no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1923.293% N/A
Holcocephala_fusca no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1910.901% N/A
Megaselia_abdita no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1913.126% N/A
Tipula_oleracea no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-198.632% N/A
Haematobia_irritans no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1914.236% N/A
M. domestica musDom2 no022004000HoxD55.q 3400lastz-1.03.523020004001 2014-08-2919.278% 4.861%
Chaoborus_trivitattus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-198.821% N/A
Culicoides_sonorensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.882% N/A
Mochlonyx_cinctipes no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.607% N/A
Megaselia_scalaris no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-198.143% N/A
Aedes_aegypti no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1914.028% N/A
Aedes_albopictus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1915.172% N/A
Hermetia_illucens no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.575% N/A
Rhagoletis_zephyria no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1921.196% N/A
Culex_quinquefasciatus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1913.421% N/A
Belgica_antarctica no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1910.737% N/A
Eristalis_dimidiata no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-199.259% N/A
Themira_minor no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1914.206% N/A
A_maculatus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1913.114% N/A
A_nili no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-199.202% N/A
A_sinensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.718% N/A
A_culicifacies no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.996% N/A
A_minimus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.353% N/A
A_funestus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.236% N/A
A_christyi no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.794% N/A
A_arabiensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.738% N/A
A_coluzzii no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.160% N/A
A_quadriannulatus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.514% N/A
A_merus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.901% N/A
A. gambiae anoGam3 no022004000HoxD55.q 3400lastz-1.03.663020004001 2017-12-2013.776% 7.627%
A_gambiae_1 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1913.328% N/A
A_melas no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.182% N/A
A_epiroticus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.650% N/A
A_cracens no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.692% N/A
A_dirus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.779% N/A
A_stephensi no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.913% N/A
A_farauti no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-2012.374% N/A
A_koliensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1910.841% N/A
A_farauti_No4 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-2011.042% N/A
A_punctulatus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1910.686% N/A
A_atroparvus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1912.705% N/A
A_darlingi no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.465% N/A
A_aquasalis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.625% N/A
A_albimanus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-11-1911.850% N/A