HgLiftOver
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HgLiftOver is a Genome Browser utility for converting genome coordinates between assemblies.
This page could be expanded to include all kinds of information about hgLiftOver.
hgLiftOver and BED format
rn4 default to hg18
hgConvert: Rat Nov. 2004 chr1:79003435-79006520 to Human Mar. 2006 chr19:50100786-50104563 (72.7% of bases, 96.3% of span)
POS: chr1:79003435-79006520 (rn4) chr19:50100786-50104563 (hg18) <-- same as hgConvert.
BED (same numbers as POS): chr1 79003435 79006520 x (rn4) chr19 50100785 50104563 x 1 (hg18) <-- start is two low.
BED (converted to correct): chr19 50100784 50104563 x (rn4) chr16 83161495 83167176 x 1 (hg18) <-- when converted back to browser coords, it's the same as position/hgConvert (chr19:50100786-50104563)
