Post-Release-Checklist

Post Release Checklist for Known Genes

This page capture the things to remember after the release of Known Genes for the new assembly.

• Update the metadata in hgcentral:

set hgNearOk and hgPbOk = 1 in the dbDb table.

change defaultDb to the new assembly.

add a record in the gdbPdb table that points the assembly to the recent protein database.

• Check to see if otherOrgs.ra file is updated for this assembly in:

kent/src/hg/hgGeneData/$org/$db/otherOrga.ra

• For human, mouse and rat ask for a push of:

/usr/local.apache/htdocs/knownGeneList/$db/*

from hgwdev --> /usr/local/apache/htdocs/knownGeneList/

/usr/local/apache/htdocs/knownGeneLists.html (update this file to point to the new assembly)

from hgwdev --> /usr/local/apache/htdocs/

on all 8 RR machines and MGC

• Add the link to the protein database /goldenPath/proteinDB/proteinsYYMMDD/database/ in:

downloads.html file

Also, include the new assembly in this file: /goldenPath/proteinDB/proteinsYYMMDD/database/README.txt