Other genome browsers: Difference between revisions
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(→Other genome browsers: updated UNLV Las Vegas Genome Browser record) |
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* [http://genome.qfab.org/ Australia] Queensland Facility for Advanced Bioinformatics (QFAB) | * [http://genome.qfab.org/ Australia] Queensland Facility for Advanced Bioinformatics (QFAB) | ||
== | == Non-UCSC Mirror Browsers == | ||
=== Animal Browsers === | |||
* [http://eyebrowse.cit.nih.gov/index.html Eyebrowse] specializing in eye tissue sequences | * [http://eyebrowse.cit.nih.gov/index.html Eyebrowse] specializing in eye tissue sequences | ||
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* [http://jimwatsonsequence.cshl.edu/cgi-perl/gbrowse/jwsequence/ Jim Watson] genome browser at CSHL | * [http://jimwatsonsequence.cshl.edu/cgi-perl/gbrowse/jwsequence/ Jim Watson] genome browser at CSHL | ||
* [http://www.jcvi.org/research/huref/ Craig Venter] genome data release | |||
* [http://lgd.abcc.ncifcrf.gov/ GARFIELD] cat genome browser, Federick, MD | |||
* [http://falcon.roswellpark.org:9090/cgi-bin/hgGateway?org=Human&db=hg17 dbRIP - Retroposon Insertions] Roswell Park Cancer Institute, MD | |||
* [http://pipeline.lbl.gov/cgi-bin/vistatrack?db=hg17&position=chr1:995532-995632 Vista] Lawrence Berkeley Lab, CA | |||
* [http://aaegypti.vectorbase.org/Genome/Home/ Aedes aegypti] | |||
* [http://silkworm.genomics.org.cn/ Silkworm] Bombyx mori, China | |||
* C. intestinalis: [http://genome.smith.man.ac.uk UCSC-based], [http://ghost.zool.kyoto-u.ac.jp/indexr1.html Gbrowse] | |||
* [http://genome.jgi-psf.org/euk_home.html The JGI-browser for various species:] Fugu, C.intestinalis, waterflea, sponge, amphioxus, snail, hydra, etc... | |||
* [http://www.bio2rdf.org/ Bio2Rdf] Semantic web atlas of postgenomic knowledge about human and mouse | |||
* [http://www.animalgenome.org/ NRSP-8] National Animal Genome Research Program - Bioinformatics Coordination Program | |||
* [http://epigenome.wustl.edu/ Epigenomics] Epigenomics Roadmap mirror at Washington University, St. Louis. | |||
=== Plant Browsers === | |||
* [http://epigenomics.mcdb.ucla.edu/ Arabidopsis] genome browser at UCLA | * [http://epigenomics.mcdb.ucla.edu/ Arabidopsis] genome browser at UCLA | ||
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* [http://atensembl.arabidopsis.info/index.html Arabidopsis] Ensembl genome browser | * [http://atensembl.arabidopsis.info/index.html Arabidopsis] Ensembl genome browser | ||
* [http:// | * [http://shenlab.sols.unlv.edu/cgi-bin/hgGateway UNLV Las Vegas Genome Browser] hosting D. melanogaster and several plant genomes: Arabidopsis, rice, sorghum and soybean. | ||
* [http:// | * [http://www.gramene.org/ gramene.org] many rice genomes and other grasses | ||
* [http:// | * [http://rice.plantbiology.msu.edu/ Rice Genome Annotation Project] [http://rice.plantbiology.msu.edu/cgi-bin/gbrowse Oryza sativa browser] | ||
* [http:// | * [http://www.ricemap.org/ Rice-Map] | ||
* [http:// | * [http://www.genome.arizona.edu/fpc/rice/gbrowse/ RICE FPC Genome Browser] from the Arizona Genomics Institute (AGI) | ||
* [http://www.maizesequence.org/ Zea mays] Maize Genome Sequencing Project | * [http://www.maizesequence.org/ Zea mays] Maize Genome Sequencing Project | ||
* [http:// | * [http://genome.ccbr.utoronto.ca/ Cannabis sativa] Cannabis browser at U Toronto | ||
=== Yeast Browsers === | |||
* | * [http://pombe.nci.nih.gov/genome/ S. pombe] (fission yeast) at NCI, NIH | ||
* [http://www. | * [http://www.yeastgenome.org/ Saccharomyces cerevisiae] database and [http://db.yeastgenome.org/cgi-bin/gbrowse/scgenome/ genome browser] | ||
* [http://www. | === Other === | ||
* [http://www.genoscope.cns.fr/externe/Francais/Projets/Projet_FN/ Paramecium tetraurelia] Genoscope, France | |||
* [http://jpgv.fli-leibniz.de/cgi/index.pl JPGV] Jena Prokaryotic Genome Browser | * [http://jpgv.fli-leibniz.de/cgi/index.pl JPGV] Jena Prokaryotic Genome Browser | ||
==See Also== | ==See Also== | ||
Revision as of 19:09, 18 June 2012
UCSC Genome mirror sites
- Medical College of Wisconsin Milwaukee, WI
- Duke University Durham, NC
- Cornell University Ithaca, NY
- Aarhus University The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark
- Australia Queensland Facility for Advanced Bioinformatics (QFAB)
Non-UCSC Mirror Browsers
Animal Browsers
- Eyebrowse specializing in eye tissue sequences
- 1000 Genomes A Deep Catalog of Human Genetic Variation
- NONCODE genome browser. UCSC browser with special tracks for non-coding annotations.
- Jim Watson genome browser at CSHL
- Craig Venter genome data release
- GARFIELD cat genome browser, Federick, MD
- dbRIP - Retroposon Insertions Roswell Park Cancer Institute, MD
- Vista Lawrence Berkeley Lab, CA
- Silkworm Bombyx mori, China
- C. intestinalis: UCSC-based, Gbrowse
- The JGI-browser for various species: Fugu, C.intestinalis, waterflea, sponge, amphioxus, snail, hydra, etc...
- Bio2Rdf Semantic web atlas of postgenomic knowledge about human and mouse
- NRSP-8 National Animal Genome Research Program - Bioinformatics Coordination Program
- Epigenomics Epigenomics Roadmap mirror at Washington University, St. Louis.
Plant Browsers
- Arabidopsis genome browser at UCLA
- Arabidopsis genome browser at Dartmouth.
- Arabidopsis Ensembl genome browser
- UNLV Las Vegas Genome Browser hosting D. melanogaster and several plant genomes: Arabidopsis, rice, sorghum and soybean.
- gramene.org many rice genomes and other grasses
- RICE FPC Genome Browser from the Arizona Genomics Institute (AGI)
- Zea mays Maize Genome Sequencing Project
- Cannabis sativa Cannabis browser at U Toronto
Yeast Browsers
- S. pombe (fission yeast) at NCI, NIH
- Saccharomyces cerevisiae database and genome browser
Other
- Paramecium tetraurelia Genoscope, France
- JPGV Jena Prokaryotic Genome Browser
