Other genome browsers: Difference between revisions
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* [http://moma.ki.au.dk/genome-mirror/ Aarhus University] The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark | * [http://moma.ki.au.dk/genome-mirror/ Aarhus University] The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark | ||
== Locations using UCSC software on other organisms (or people) == | |||
== Locations using UCSC software on other organisms (or people) or additional content on our organisms == | |||
Note that not all of these sites are updating their software to the latest versions. To learn what version is being used, look at the v### number at the top of the hgTracks page ([host]/cgi-bin/hgTracks). | |||
* [http://www.genomequebec.mcgill.ca/compgen/browser-VPR/cgi-bin/hgGateway Ververt monkey] at McGill | * [http://www.genomequebec.mcgill.ca/compgen/browser-VPR/cgi-bin/hgGateway Ververt monkey] at McGill | ||
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* [http://genome.ccbr.utoronto.ca/ Cannabis sativa] at U Toronto | * [http://genome.ccbr.utoronto.ca/ Cannabis sativa] at U Toronto | ||
* [http://aedes.caltech.edu/cgi-bin/hgGateway Aedes aegypti] | * [http://aedes.caltech.edu/cgi-bin/hgGateway Aedes aegypti] and two other mosquitoes at CalTech | ||
* Penn State has some [http://main.genome-browser.bx.psu.edu personal human genomes] not at UCSC | * Penn State has some [http://main.genome-browser.bx.psu.edu personal human genomes] not at UCSC | ||
* [http://genome.smith.man.ac.uk Manchester, UK] has some local content on mouse, C. intestinalis and other orgs. | |||
* [http://epigenome.wustl.edu/ Epigenomics] Epigenomics Roadmap mirror at Washington University, St. Louis has content not on the main UCSC Browser, but mostly contained in the Track Data Hubs at UCSC. | |||
* [http://shenlab.sols.unlv.edu/cgi-bin/hgGateway UNLV Las Vegas] Genome Browser hosting D. melanogaster and some plants | |||
== Non-UCSC (genome.ucsc.edu) Browsers == | == Non-UCSC (genome.ucsc.edu) Browsers == | ||
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* [http://www.bio2rdf.org/ Bio2Rdf] Semantic web atlas of postgenomic knowledge about human and mouse | * [http://www.bio2rdf.org/ Bio2Rdf] Semantic web atlas of postgenomic knowledge about human and mouse | ||
* [http://aaegypti.vectorbase.org/Genome/Home/ Aedes aegypti] mosquito | |||
* [http://aaegypti.vectorbase.org/Genome/Home/ Aedes aegypti] | |||
* [http://silkworm.genomics.org.cn/ Silkworm] Bombyx mori, China | * [http://silkworm.genomics.org.cn/ Silkworm] Bombyx mori, China | ||
* [http://www.animalgenome.org/ NRSP-8] National Animal Genome Research Program - Bioinformatics Coordination Program | * [http://www.animalgenome.org/ NRSP-8] National Animal Genome Research Program - Bioinformatics Coordination Program | ||
=== Plant Browsers === | === Plant Browsers === | ||
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* [http://pombe.nci.nih.gov/genome/ S. pombe] (fission yeast) at NCI, NIH | * [http://pombe.nci.nih.gov/genome/ S. pombe] (fission yeast) at NCI, NIH | ||
=== Other === | === Other === | ||
Revision as of 01:07, 19 January 2013
UCSC Genome mirror sites
These mirrors are not populated nor maintained by UCSC. Any questions regarding them should be directed towards their host institution/organization.
- Medical College of Wisconsin Milwaukee, WI
- Cornell University Ithaca, NY
- Aarhus University The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark
Locations using UCSC software on other organisms (or people) or additional content on our organisms
Note that not all of these sites are updating their software to the latest versions. To learn what version is being used, look at the v### number at the top of the hgTracks page ([host]/cgi-bin/hgTracks).
- Ververt monkey at McGill
- Cannabis sativa at U Toronto
- Aedes aegypti and two other mosquitoes at CalTech
- Penn State has some personal human genomes not at UCSC
- Manchester, UK has some local content on mouse, C. intestinalis and other orgs.
- Epigenomics Epigenomics Roadmap mirror at Washington University, St. Louis has content not on the main UCSC Browser, but mostly contained in the Track Data Hubs at UCSC.
- UNLV Las Vegas Genome Browser hosting D. melanogaster and some plants
Non-UCSC (genome.ucsc.edu) Browsers
The UCSC Genome Browser is primarily funded to host vertebrate genomes. If you are looking for a genome browser that UCSC does not host, it may be available from another source. These browsers are not affiliated with the UCSC Genome Browser and any questions regarding them should be directed to their hosts.
Animal Browsers
- 1000 Genomes A Deep Catalog of Human Genetic Variation
- NONCODE genome browser. UCSC browser with special tracks for non-coding annotations.
- Jim Watson genome browser at CSHL
- Craig Venter genome data release
- dbRIP - Retroposon Insertions Roswell Park Cancer Institute, MD
- Vista Lawrence Berkeley Lab, CA
- GARFIELD cat genome browser, Federick, MD
- C. intestinalis: UCSC-based, Gbrowse
- The JGI-browser for various species: Fugu, C.intestinalis, waterflea, sponge, amphioxus, snail, hydra, etc...
- Bio2Rdf Semantic web atlas of postgenomic knowledge about human and mouse
- Aedes aegypti mosquito
- Silkworm Bombyx mori, China
- NRSP-8 National Animal Genome Research Program - Bioinformatics Coordination Program
Plant Browsers
- EnsemblPlants incl. Arabidopsis, rice, corn, tomato, soybean, Physcomitrella
- Arabidopsis genome browser at UCLA
- Arabidopsis genome browser at Dartmouth.
- Arabidopsis arabidopsis.info Ensembl-based genome browser
- UNLV Las Vegas Genome Browser hosting: Arabidopsis, rice, sorghum and soybean, as well as D. melanogaster
- gramene.org many rice genomes and other grasses
- RICE FPC Genome Browser from the Arizona Genomics Institute (AGI)
- Zea mays Maize Genome Sequencing Project
Fungi/Yeast Browsers
- Saccharomyces cerevisiae database and genome browser from SGD/Stanford University
- S. pombe (fission yeast) at NCI, NIH
Other
- Archaea browser from the Lowe Lab at UCSC
- Paramecium tetraurelia Genoscope, France
- JPGV Jena Prokaryotic Genome Browser
