Other genome browsers: Difference between revisions

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* [http://plants.ensembl.org/index.html EnsemblPlants] incl. Arabidopsis, rice, corn, tomato, soybean, Physcomitrella
* [http://plants.ensembl.org/index.html EnsemblPlants] incl. Arabidopsis, rice, corn, tomato, soybean, Physcomitrella


* Assembly hub including A. thaliana, B. rapa, and R. communis at UCSC. It can be found in Genome Browser's [http://genome.ucsc.edu/cgi-bin/hgHubConnect list of public hubs], under the name 'Plants'.
* [http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=hiram&hgS_otherUserSessionName=araTha1.hub Arabidopsis Thaliana] TAIR-10 UCSC public hub (see also: [http://genome.ucsc.edu/cgi-bin/hgHubConnect list of public hubs])
 
* [http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=hiram&hgS_otherUserSessionName=braRap1.hub Brassica rapa] UCSC public hub (see also: [http://genome.ucsc.edu/cgi-bin/hgHubConnect list of public hubs])
 
* [http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=hiram&hgS_otherUserSessionName=ricCom1.hub Ricinus communis] UCSC public hub (see also: [http://genome.ucsc.edu/cgi-bin/hgHubConnect list of public hubs])


* [http://epigenomics.mcdb.ucla.edu/ Arabidopsis] genome browser at UCLA
* [http://epigenomics.mcdb.ucla.edu/ Arabidopsis] genome browser at UCLA

Revision as of 22:55, 27 March 2014

Official UCSC Genome mirror site

This mirror is maintained by the Browser staff.


UCSC Genome mirror sites

These mirrors are not populated nor maintained by UCSC. Any questions regarding them should be directed towards their host institution/organization.

  • Aarhus University The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark


Locations using UCSC software on other organisms (or people) or additional content on our organisms

Note that not all of these sites are updating their software to the latest versions. To learn what version is being used, look at the v### number at the top of the hgTracks page ([host]/cgi-bin/hgTracks).

  • Manchester, UK has some local content on mouse, C. intestinalis and other orgs.
  • Epigenomics Epigenomics Roadmap mirror at Washington University, St. Louis has content not on the main UCSC Browser, but mostly contained in the Track Data Hubs at UCSC.


Browsers Using Non-UCSC Software

The UCSC Genome Browser is primarily funded to host vertebrate genomes. If you are looking for a genome browser that UCSC does not host, it may be available from another source. These browsers are not affiliated with the UCSC Genome Browser and any questions regarding them should be directed to their hosts.

Animal Browsers

  • NONCODE genome browser. UCSC browser with special tracks for non-coding annotations.
  • Vista Lawrence Berkeley Lab, CA
  • GARFIELD cat genome browser, Federick, MD
  • Bio2Rdf Semantic web atlas of postgenomic knowledge about human and mouse
  • NRSP-8 National Animal Genome Research Program - Bioinformatics Coordination Program

Plant Browsers

  • EnsemblPlants incl. Arabidopsis, rice, corn, tomato, soybean, Physcomitrella
  • Arabidopsis arabidopsis.info Ensembl-based genome browser
  • Zea mays Maize Genome Sequencing Project

Fungi/Yeast Browsers

Other

  • JPGV Jena Prokaryotic Genome Browser

See Also

Related Wikis