TandemDups: Difference between revisions

Revision as of 20:59, 22 May 2017

methods

These are measurements of identical paired sequences with a separation between the pairs of at least one nucleotide. The smallest size sequence in this survey is 30 bases, the largest separation considered was 20,000 bases.

The procedure to find these sequences is as follows:

generate 29 base kmers for the entire genome, allow only kmers with bases: A C T G, no N's allowed.
pair up identical kmers with at least one base separation and up to 20,000 bases separation. This separation sequence is referred to here as the gap in this document.
collapse overlapping kmer pairs when they are the same size of sequence and the same spacing between the pairs. This procedure preserves the definition of duplicated identical pairs.
the resulting pairs can now be longer sequences with smaller separation then the constituent pairs
final result selects sizes of 30 bases or more for the size of the paired sequence, and at least one base remaining as a separation gap.
collapsed pairs that close the gap are discarded. They appear to indicate simple repeat sequences when this happens. It would be interesting to have this result available, but that is not available at this time.

The reason for starting with 29 base sized pairs and then selecting results of at least 30 base sized pairs results in a reasonable number of 30 base pairs. If the procedure starts with 30 base sized pairs, it produces way too many 30 base kmer pairs for a reasonable count.

The measurements are taken from the resulting db.tandemDups.bed[.gz] file in /hive/data/genomes/<db>/bed/tandemDups/db.tandemDups.bed[.gz] The score column in the bed file (column 5) is the size of the duplicated sequence. The gap size between the duplicated sequence is thus calculated from: end - start + 2 * score

This data is also available in the tandemDups table for sequences with genome browser databases. Not all sequences measured here have genome browser databases.

The item total is the sum of the sizes of the duplicated sequences. Not both sides though, just one side. This indicates how much sequence is duplicated. Multiply this by 2 to see total amount of sequence involved in these repeats for both sides.

The gap total is the sum of the sizes of all the separation gaps between the paired sequences.

table features

The table columns can be sorted, click on the up/down arrow icon in the column header. The 'year' is what we have in the dbDb table as indicated from the assembly information files for the date of the assembly. A few do not have dates (set to 1880), and do not have database genome browsers The example item is a worst case example, where the ratio of dup sequence size to gap size is the highest, i.e. smallest gap with largest dup size

tandemDups table statistics

count	year	dbName	ncbiAsmId	assembly method	item count	item median	item total	gap median	gap total	example item dup size, gap size, link	scatter plot dup size vs. gap size
019	2014	acaChl1	GCF_000695815.1	SOAPdenovo v. 1.6	69222	38	3687159	479	270396956	448, 1, KK830956:17007-17903	plot acaChl1
020	2012	aciBauTYTH_1	GCF_000302575.1	tbd	175	43	11650	1165	777735	35, 1, chr_CP003856:2714351-2714421	plot aciBauTYTH_1
021	2006	afrOth13	tbd	tbd	63170	39	3109998	1833	319093167	126, 1, 3-3:1498405-1498657	plot afrOth13
022	2009	ailMel1	GCF_000004335.2	tbd	252804	36	12081062	7914	2120476903	1357, 2, GL194066.1:206322-209037	plot ailMel1
023	2012	allMis1	GCF_000281125.1	Allpaths v. R41313; manual scaffolding	77832	39	8850601	2629	379690780	2771, 1, JH736852:249449-254991	plot allMis1
024	2013	allSin1	GCF_000455745.1	SOAPdenovo v. 1.05	116160	39	11500145	3510	624671088	5451, 1, KE696051:101233-112135	plot allSin1
025	2013	amaVit1	GCA_000332375.1	Ray software v. 3	37254	46	10717950	256	63766115	5218, 14, KB272082:90533-100982	plot amaVit1
026	2013	anaPla1	GCF_000355885.1	SOAPdenovo Release v. 1.03	27792	43	2580234	401	91882502	1258, 1, KB745735:2510-5026	plot anaPla1
027	2014	ancCey1	GCA_000688135.1	Velvet v. 1.2.05; BGI GapCloser v. 1.12 (release_2011); HaploMerger v. 20111230; ERANGE v. 3.2	55040	40	3358224	389.5	157542766	4183, 1, JARK01001394v1:846761-855127	plot ancCey1
028	2014	angJap1	GCA_000470695.1	CLC NGS Cell v. 3.2; CLC NGS Cell v. 4.0beta	546983	44	32365612	800	580570188	1181, 1, KI307522:56201-58563	plot angJap1
029	2007	anoCar1	tbd	tbd	751544	38	40990303	2923	4158391303	351, 1, scaffold_31:2142294-2142996	plot anoCar1
030	2010	anoCar2	GCF_000090745.1	Arachne v. 3.0.0	674365	37	36071400	3201	3874056176	392, 1, chr4:7395659-7396443	plot anoCar2
031	2003	anoGam1	tbd	tbd	75957	43	5353295	2383	356254048	1175, 1, chrX:14717656-14720006	plot anoGam1
032	2013	apaSpi1	GCA_000385615.1	SOAPdenovo v. 1.0.5	78831	41	3668114	120	236011041	453, 2, KB928133:814324-815231	plot apaSpi1
033	2014	apaVit1	GCF_000703405.1	SOAPdenovo v. 1.6	24291	35	1216678	112	56084043	453, 1, KL385068:59340-60246	plot apaVit1
034	2004	apiMel1	tbd	tbd	83149	38	3897116	280	81345069	203, 1, GroupUn.6971:896-1302	plot apiMel1
035	2005	apiMel2	tbd	tbd	91284	38	4467103	295	110415978	234, 1, Group8:8120781-8121249	plot apiMel2
036	2005	apiMel3	tbd	tbd	100380	38	5142600	318	146199642	234, 1, Group8:9788059-9788527	plot apiMel3
037	2010	apiMel4	GCF_000002195.4	Atlas assembly system v. before 2011	101842	38	5017659	328	182902657	234, 1, Group8:11123745-11124213	plot apiMel4
038	2008	aplCal1	tbd	tbd	362965	33	14931570	1162	1691576982	254, 1, scaffold_486:233208-233716	plot aplCal1
039	2014	aptFor1	GCF_000699145.1	SOAPdenovo v. 1.6	107781	59	13547646	120	162744750	2370, 1, KL225745:613720-618460	plot aptFor1
040	2015	aptMan1	GCF_001039765.1	tbd	282012	72	84603242	159	396269019	13772, 1, NW_013987314v1:1452350-1479894	plot aptMan1
041	2014	aquChr1	GCA_000696035.1	ABySS v. 1.3.6	91231	42	4160856	43	70439237	98, 1, KK848043:4630547-4630743	plot aquChr1
042	2014	aquChr2	GCA_000766835.1	AllPaths-LG v. August 2013	27433	39	1833575	548	117223799	6351, 4, KN265844v1:264833-277538	plot aquChr2
043	2013	araMac1	GCA_000400695.1	CLC Genomics Workbench v. 4.9	20437	44	1789638	1788	35728109	241, 2, KE047968:4314-4797	plot araMac1
044	1880	araTha1	GCF_000001735.3	tbd	42547	40	2336394	4141	237921318	415, 1, chr3:12226092-12226922	plot araTha1
045	2012	ascSuu1	GCA_000298755.1	SOAPdenovo v. 1.04	26863	62	2864530	136	30068625	680, 1, JH878990v1:516922-518282	plot ascSuu1
046	2013	astMex1	GCF_000372685.1	AllPathsLG v. Jan-2013	300773	36	13069886	344	878056894	647, 1, KB872443:19678-20972	plot astMex1
047	2013	balAcu1	GCF_000493695.1	SOAPdenovo v. 16-Mar-2012	317691	37	19886322	7511	2584004816	5160, 1, KI537228:6365-16685	plot balAcu1
048	2014	balPav1	GCA_000709895.1	SOAPdenovo v. 1.6	17941	37	1027192	127	51713556	375, 1, KL478702:45795-46545	plot balPav1
049	2006	borEut13	tbd	tbd	95035	35	3952633	847	394283618	125, 1, chr4:75059497-75059747	plot borEut13
050	2004	bosTau1	tbd	tbd	288698	36	12358995	3236	1418202012	332, 1, SCAFFOLD225782:8549-9213	plot bosTau1
051	2009	bosTau5	tbd	tbd	1143604	37	53681590	9372	10891150076	474, 1, chr1:65205480-65206428	plot bosTau5
052	2009	bosTau6	GCF_000003055.5	UMD Overlapper v. 2009; additional processing	1243148	37	57730762	8928	11394478150	923, 1, chr22:31476636-31478482	plot bosTau6
053	2014	bosTau8	GCF_000003055.5	UMD Overlapper v. 2009; additional processing	1243008	37	57724227	8930	11394290218	923, 1, chr22:31476636-31478482	plot bosTau8
054	2009	bosTauMd3	tbd	tbd	1211279	37	56451996	9197	11353955385	923, 1, chr22:31476636-31478482	plot bosTauMd3
055	2008	braFlo2	tbd	tbd	335984	40	21237833	1088	1244816809	1512, 1, Bf_V2_32:3091839-3094863	plot braFlo2
056	1880	braRap1	GCF_000309985.1	SOAPdenovo v. 1.04	74411	41	5348931	2750	314357742	1288, 2, chrA5:13328835-13331412	plot braRap1
057	2007	bruMal1	tbd	tbd	70008	37	3314327	264	46555408	321, 1, Bmal_supercontigDegenerate10576:240-882	plot bruMal1
058	2014	bruMal2	tbd	tbd	72743	38	3759073	402	111607550	453, 1, Bmal_v3_scaffold8088:119-1025	plot bruMal2
059	2014	bucRhi1	GCF_000710305.1	SOAPdenovo v. 1.6	43210	56	3393282	73	48672532	715, 1, KL533494:44624-46054	plot bucRhi1
061	2011	burXyl1	tbd	tbd	12719	36	772590	1694	51888226	134, 1, scaffold01254:876286-876554	plot burXyl1
062	2010	caeAng1	GCA_000165025.1	Velvet v. 0.7.56	100045	42	4176946	305	156635287	71, 1, scafRNAPATHr22140:12806-12948	plot caeAng1
063	2012	caeAng2	tbd	tbd	148180	41	6380576	369	202631392	131, 1, Cang_2012_03_13_00262:54689-54951	plot caeAng2
064	2008	caeJap1	tbd	tbd	54911	37	2702441	669	184995823	179, 1, chrUn:91344286-91344644	plot caeJap1
065	2009	caeJap2	tbd	tbd	61394	38	3566172	1128.5	219090212	153, 1, chrUn:143662847-143663153	plot caeJap2
066	1880	caeJap2a	tbd	tbd	59499	38	3480262	973	192672580	153, 1, Cjap_Contig3098:12088-12394	plot caeJap2a
067	2010	caeJap3	tbd	tbd	47394	36	2103165	360	75708219	176, 1, ABLE03028834:844-1196	plot caeJap3
068	2010	caeJap4	GCA_000147155.1	Celera assembler v. 6.0	66567	37	3336966	815	226847582	176, 1, Scaffold17893:329482-329834	plot caeJap4
069	2007	caePb1	tbd	tbd	67100	38	3590813	2009	281616954	168, 1, chrUn:161968878-161969214	plot caePb1
070	2008	caePb2	tbd	tbd	71710	39	3958202	3788.5	420907669	239, 1, chrUn:97561553-97562031	plot caePb2
071	2010	caePb3	GCA_000143925.2	PCAP v. 9/3/04	71721	39	3951441	3770	420080585	239, 1, Scfld02_132:346628-347106	plot caePb3
072	2005	caeRem1	tbd	tbd	78288	40	4264984	1786	318215569	193, 1, SuperCont3184:2552-2938	plot caeRem1
073	2006	caeRem2	tbd	tbd	102926	41	5484074	859	350685995	193, 1, chrUn:145434398-145434784	plot caeRem2
074	2007	caeRem3	tbd	tbd	69306	40	3736990	2408	318941600	181, 1, chrUn:147913992-147914354	plot caeRem3
075	2007	caeRem4	GCF_000149515.1	tbd	70702	39	3779779	2320	319257206	181, 1, Crem_Contig169:93478-93840	plot caeRem4
076	2010	caeSp111	GCA_000186765.1	Celera assembler v. 6.0	16576	36	783303	2230.5	70961296	161, 1, Scaffold630:3047861-3048183	plot caeSp111
077	2012	caeSp51	tbd	tbd	20559	36	877191	1869	57741956	109, 1, Csp5_scaffold_04217:6885-7103	plot caeSp51
078	2010	caeSp91	tbd	tbd	67737	36	3110776	1418	221671479	195, 1, Scaffold7109:118818-119208	plot caeSp91
079	2014	calAnn1	GCF_000699085.1	SOAPdenovo v. 1.6	115073	39	9049123	590	450885170	1104, 1, KL218440:2851016-2853224	plot calAnn1
080	2009	calJac3	GCF_000004665.1	PCAP v. 2009	933429	35	41296063	4319	6020954211	342, 1, chrUn_GL289980:2548-3232	plot calJac3
081	2013	calMil1	GCF_000165045.1	Celera v. 6.1	365912	35	15637123	1428	1794921679	144, 1, KI635985:586597-586885	plot calMil1
082	2011	camFer1	GCF_000311805.1	SOAPdenovo v. V1.05	101845	33	6622167	162	292517673	934, 1, KB017230:2215149-2217017	plot camFer1
083	2004	canFam1	tbd	tbd	708312	35	27662849	8269	6176862199	292, 1, chr7:79846479-79847063	plot canFam1
084	2005	canFam2	tbd	tbd	953541	35	38683290	7862	8147344317	746, 1, chrUn:76334072-76335564	plot canFam2
085	2011	canFam3	GCF_000002285.3	Arachne v. April 2010	971687	35	40018993	7312	7976595682	292, 1, chr7:77369247-77369831	plot canFam3
086	2003	canFamPoodle1	GCA_000181415.1	tbd	46485	34	1777637	138	18530637	210, 1, AACN010470517:102-522	plot canFamPoodle1
087	2005	canHg12	tbd	tbd	33765	35	1344552	617	139440788	121, 1, 12:76878573-76878815	plot canHg12
088	2014	capCar1	GCF_000700745.1	SOAPdenovo v. 1.6	63810	36	3017510	389.5	221999357	1265, 2, KL360999:16916-19447	plot capCar1
089	2012	capHir1	GCF_000317765.1	SOAPdenovo v. 1.03	620672	36	27059872	6750	4701845701	4915, 1, chr24:61180186-61190016	plot capHir1
090	2014	carCri1	GCF_000690535.1	SOAPdenovo v. 1.6	20461	37	1163337	68	30549622	529, 1, KK515247:46620-47678	plot carCri1
091	2008	cavPor3	GCF_000151735.1	unknown v. before 2008	423409	39	22453984	5720	3122228393	260, 1, scaffold_239:788868-789388	plot cavPor3
092	2002	cb1	tbd	tbd	36051	37	2442691	558	98718219	191, 1, chrUn:90311348-90311730	plot cb1
093	2005	cb2	tbd	tbd	35978	37	2444306	560	98588417	317, 1, chrIII:126724-127358	plot cb2
094	2007	cb3	tbd	tbd	35990	37	2451574	568.5	99618994	317, 1, chrIII:11646590-11647224	plot cb3
095	2011	cb4	tbd	tbd	36155	37	2519414	578	100960462	317, 1, chrIII:76433-77067	plot cb4
096	2010	ce10	tbd	tbd	33806	38	1760308	427	82769023	1500, 1, chrIV:5554976-5557976	plot ce10
097	2013	ce11	GCF_000002985.6	tbd	33816	38	1760641	427	82800067	1500, 1, chrIV:5554985-5557985	plot ce11
098	2004	ce2	tbd	tbd	33799	38	1759889	427	82752389	1500, 1, chrIV:5554978-5557978	plot ce2
099	2005	ce3	tbd	tbd	33799	38	1759889	427	82752398	1500, 1, chrIV:5554972-5557972	plot ce3
100	2007	ce4	tbd	tbd	33792	38	1759610	427	82743753	1500, 1, chrIV:5554972-5557972	plot ce4
101	2007	ce5	tbd	tbd	33794	38	1759781	427	82743927	1500, 1, chrIV:5554972-5557972	plot ce5
102	2008	ce6	tbd	tbd	33794	38	1759781	427	82743927	1500, 1, chrIV:5554972-5557972	plot ce6
103	2009	ce7	tbd	tbd	33806	38	1760308	427	82769007	1500, 1, chrIV:5554972-5557972	plot ce7
104	2009	ce8	tbd	tbd	33806	38	1760308	427	82769007	1500, 1, chrIV:5554972-5557972	plot ce8
105	2010	ce9	tbd	tbd	33806	38	1760308	427	82769007	1500, 1, chrIV:5554972-5557972	plot ce9
106	2012	cerSim1	GCF_000283155.1	ALLPATHS v. R41370	182565	35	7975290	7694	1503937586	217, 1, JH767741:19156533-19156967	plot cerSim1
107	2014	chaVoc1	GCF_000708025.1	SOAPdenovo v. 1.6	53439	41	4896801	1813	256127930	1729, 2, KL408233:1252791-1256250	plot chaVoc1
108	2014	chaVoc2	GCF_000708025.1	SOAPdenovo v. 1.6	53430	41	4896157	1812	256095280	1729, 2, KL871243:1252791-1256250	plot chaVoc2
109	2013	cheMyd1	GCF_000344595.1	SOAPdenovo v. 1.05	338286	38	27175756	2112	1711904320	2073, 1, KB534909:887250-891396	plot cheMyd1
110	2012	chiLan1	GCA_000276665.1	ALLPATHS v. R40776	162447	34	8332343	5673	1154905940	274, 1, JH721868:33430685-33431233	plot chiLan1
111	2013	chlSab1	tbd	tbd	933660	34	44465888	4819	6164212406	1783, 1, chrY:1553648-1557214	plot chlSab1
112	2014	chlSab2	GCF_000409795.2	ALLPATHS and Newbler v. 13-Feb-2013	934123	34	44534038	4823	6168422847	1783, 1, chrY:1553648-1557214	plot chlSab2
113	2014	chlUnd1	GCF_000695195.1	SOAPdenovo v. 1.6	28454	43	1824188	165	94696650	497, 1, KK750077:105999-106993	plot chlUnd1
114	2008	choHof1	GCA_000164785.1	tbd	209811	36	9540548	431	262030496	307, 1, scaffold_3919:20103-20717	plot choHof1
115	2011	chrPic1	tbd	tbd	281953	43	16725223	1275	1210278039	255, 1, JH584700:738019-738529	plot chrPic1
116	2014	chrPic2	GCA_000241765.2	Newbler v. 2.6	313473	43	18318992	1246	1347589030	269, 1, chrUn_KK085497v1:1941-2479	plot chrPic2
117	2002	ci1	GCA_000183065.1	tbd	48663	39	2653274	626	122189601	486, 1, Scaffold_604:30085-31057	plot ci1
118	2005	ci2	tbd	tbd	119965	43	8287326	1961	566064667	358, 1, scaffold_83:159982-160698	plot ci2
119	2011	ci3	GCF_000224145.1	tbd	48178	39	2574684	692	149951145	486, 1, chrUn_NW_004190340v1:65099-66071	plot ci3
120	2003	cioSav1	tbd	tbd	123843	39	6363601	2503	618224769	189, 1, ps_297:30448-30826	plot cioSav1
121	2005	cioSav2	tbd	tbd	157468	38	7731855	2875	819500559	280, 1, reftig_238:125039-125599	plot cioSav2
122	2013	colLiv1	GCF_000337935.1	SOAPdenovo v. 2.0	139510	33	6394287	112	419571584	3080, 2, KB375367:1029739-1035900	plot colLiv1
123	2014	colStr1	GCF_000690715.1	SOAPdenovo v. 1.6	55406	40	3066780	131	154687137	309, 1, KK533057:6873-7491	plot colStr1
124	2012	conCri1	GCF_000260355.1	AllPaths v. 2012	253120	35	11854934	7807	2109955223	265, 1, JH655888:40209348-40209878	plot conCri1
125	2014	corBra1	GCF_000691975.1	SOAPdenovo v. 1.6	91630	37	6371852	297	248570100	1583, 1, KK718913:5901493-5904659	plot corBra1
126	2014	corCor1	GCF_000738735.1	AllPaths v. Allpaths-LG version 41687	58556	36	3043376	370	184023111	1935, 1, KL997525:15617964-15621834	plot corCor1
127	2013	cotJap1	GCA_000511605.1	Soapdenovo v. 1.0.5b; bwa v. 0.5.9; SSPACE v. 1.2	7329	33	280548	75	2914174	214, 1, DF262918:84572-85000	plot cotJap1
128	2013	criGri1	GCF_000419365.1	SOAPdenovo v. 2.2	392434	34	24519809	4676	2562035140	2419, 1, KE383702:1200830-1205668	plot criGri1
129	2011	criGriChoV1	GCF_000223135.1	SOAPdenovo v. 1.05	399488	34	20807116	3409	2361128543	2346, 1, NW_003614503v1:231537-236229	plot criGriChoV1
130	2014	cucCan1	GCF_000709325.1	SOAPdenovo v. 1.6	126008	42	16101261	2142	633238955	2278, 1, KL448309:4464943-4469499	plot cucCan1
131	2014	cynSem1	GCF_000523025.1	SOAPdenovo v. April-2011	83655	37	6369004	261	184971677	1536, 1, chr1:16715796-16718868	plot cynSem1
132	2014	cypVar1	GCA_000732505.1	AllPaths v. May 2014	136313	39	9823682	1299	502219020	2138, 1, KL652705:564642-568918	plot cypVar1
133	2014	danRer10	GCF_000002035.5	tbd	830199	36	39955973	1138	3506165088	829, 1, chr7:19536660-19538318	plot danRer10
134	2006	danRer4	tbd	tbd	967867	37	3554929771106085888	1483	-5209059568647030784	829, 1, chr7:22863126-22864784	plot danRer4
135	2007	danRer5	tbd	tbd	878638	36	43432292	1103	3637100049	829, 1, chr7:21951036-21952694	plot danRer5
136	2008	danRer6	tbd	tbd	1054071	36	55306251	1381	4517471825	2083, 1, chr10:31284766-31288932	plot danRer6
137	2010	danRer7	GCF_000002035.4	tbd	910457	36	43398798	1289	3925402743	829, 1, chr7:20946224-20947882	plot danRer7
138	2014	dicLab1	GCA_000689215.1	tbd	204757	36	11489728	924	691437386	841, 1, HG916851:32290203-32291885	plot dicLab1
139	2008	dipOrd1	GCA_000151885.1	tbd	1877441	35	85259926	2185	7963556509	183, 1, scaffold_30074:4167-4533	plot dipOrd1
140	2013	dirImm1	tbd	tbd	3309	36	316992	58	1820327	1613, 1, nDi_2_2_scaf00284:19002-22228	plot dirImm1
141	2003	dm1	tbd	tbd	12199	50	1260685	3445	60460276	3882, 2, chr2L:1894810-1902575	plot dm1
142	2004	dm2	tbd	tbd	13213	51	1372092	3723	67342596	3882, 2, chr2L:1893145-1900910	plot dm2
143	2006	dm3	tbd	tbd	113222	40	6787673	2412	622002007	3882, 2, chr2L:1893145-1900910	plot dm3
144	2014	dm6	GCF_000001215.4	tbd	48031	48	4403254	3448	254474999	3882, 2, chr2L:1893145-1900910	plot dm6
145	2003	dp2	tbd	tbd	16790	44	1110948	926	42217528	227, 1, Contig7446_Contig2444:1979445-1979899	plot dp2
146	2004	dp3	tbd	tbd	20334	44	1389766	1239	62703720	312, 1, chrU:9357988-9358612	plot dp3
147	2006	dp4	tbd	tbd	53060	46	3495255	2437	228127096	312, 1, Unknown_singleton_2460:32411-33035	plot dp4
148	2012	droAlb1	GCA_000298335.1	SOAPdenovo v. 1.04	126521	30	3970849	70	35343627	76, 1, JH853217:889-1041	plot droAlb1
149	2004	droAna1	tbd	tbd	67882	40	3659056	697	196198368	572, 1, 2446670:645-1789	plot droAna1
150	2005	droAna2	tbd	tbd	248263	42	14624595	918	748771139	572, 1, scaffold_13499:1095908-1097052	plot droAna2
151	2006	droAna3	GCF_000005115.1	tbd	246334	42	14515690	927	745835855	572, 1, scaffold_13499:1092668-1093812	plot droAna3
152	2013	droBia2	GCA_000233415.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	46906	42	2807408	2591	175612579	2241, 3, AFFD02006372:54233-58717	plot droBia2
153	2013	droBip2	GCA_000236285.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0	54693	39	2946335	1371	204354268	179, 1, KB463958:131929-132287	plot droBip2
154	2013	droEle2	GCA_000224195.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATKv. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	34862	41	2092385	2187	135919965	270, 1, KB458613:1953986-1954526	plot droEle2
155	2005	droEre1	tbd	tbd	96336	44	5585722	674	191777516	359, 1, scaffold_1301:371-1089	plot droEre1
156	2006	droEre2	GCF_000005135.1	tbd	95081	44	5535640	676	190524603	359, 1, scaffold_1301:371-1089	plot droEre2
157	2013	droEug2	GCA_000236325.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	59111	40	3495099	1518	181127987	141, 1, KB464979:6084-6366	plot droEug2
158	2013	droFic2	GCA_000220665.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	21964	44	1418464	2380.5	83742114	190, 1, AFFG02001364:4041-4421	plot droFic2
159	2005	droGri1	tbd	tbd	458551	40	21432909	509	538034457	491, 1, scaffold_2211:899-1881	plot droGri1
160	2006	droGri2	GCF_000005155.2	tbd	302510	40	14467041	522	418546843	188, 1, scaffold_6592:1167-1543	plot droGri2
161	2013	droKik2	GCA_000224215.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	31358	41	1855833	1533.5	112074726	117, 1, KB459586:778466-778700	plot droKik2
162	2013	droMir2	GCA_000269505.2	Newbler v. 2.6	18368	45	1204033	1747	75101816	140, 1, chr2:3040735-3041015	plot droMir2
163	2004	droMoj1	tbd	tbd	69928	38	3220037	310	78711524	225, 1, contig_34282:247-697	plot droMoj1
164	2005	droMoj2	tbd	tbd	102140	41	5658627	1086	363630258	202, 1, scaffold_6540:14391223-14391627	plot droMoj2
165	2006	droMoj3	GCF_000005175.2	tbd	101230	41	5606832	1114	361818537	202, 1, scaffold_6540:14384339-14384743	plot droMoj3
166	2005	droPer1	GCF_000005195.2	tbd	75046	45	5536401	2595	325634621	580, 2, super_62:246420-247581	plot droPer1
167	2013	droPse3	GCF_000001765.3	PBJelly v. 12.8.2; Atlas genome assembly	53481	45	3494617	2480	231367590	312, 1, chrUn_CH674897_1:32411-33035	plot droPse3
168	2013	droRho2	GCA_000236305.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	68118	41	4002283	1672	235074913	205, 1, AFPP02028413:1419-1829	plot droRho2
169	2005	droSec1	GCA_000005215.1	tbd	127886	38	6652375	465	177925676	360, 1, super_6483:1086-1806	plot droSec1
170	2005	droSim1	tbd	tbd	47915	42	2874159	1400	171101666	217, 1, chr3R_random:168062-168496	plot droSim1
171	2014	droSim2	GCF_000754195.2	Velvet v. 1.1.04	10385	40	551061	466	26120972	217, 1, chrUn_NW_015496898v1:4674-5108	plot droSim2
172	2013	droSuz1	GCA_000472105.1	SOAPdenovo v. 2	117859	46	12342639	2277	517597655	4939, 1, KI419149:2637663-2647541	plot droSuz1
173	2013	droTak2	GCA_000224235.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	48870	41	2816693	2013	202395837	306, 1, AFFI02002878:4290-4902	plot droTak2
174	2004	droVir1	tbd	tbd	147648	35	6630839	429	239695710	244, 1, scaffold_0:5707381-5707869	plot droVir1
175	2005	droVir2	tbd	tbd	432783	30	17539885	481	757905036	244, 1, scaffold_13049:18877549-18878037	plot droVir2
176	2006	droVir3	GCF_000005245.1	tbd	407188	30	16757243	495	747769004	244, 1, scaffold_13049:18848863-18849351	plot droVir3
177	2006	droWil1	GCF_000005925.1	tbd	118355	42	7234894	1695	472632964	954, 1, scaffold_181130:9135849-9137757	plot droWil1
178	2006	droWil2	GCF_000005925.1	tbd	118240	42	7228999	1695	472142234	954, 1, CH964272:9135849-9137757	plot droWil2
179	2004	droYak1	tbd	tbd	81563	43	6228480	3752	459910434	851, 1, chr3L:24830341-24832043	plot droYak1
180	2005	droYak2	tbd	tbd	93441	45	6941572	3518	501527798	1122, 2, chrU:731511-733756	plot droYak2
181	2006	droYak3	GCF_000005975.2	tbd	85136	46	6497582	2641	404384429	1122, 2, chrUn_CH892674_1:731511-733756	plot droYak3
184	2012	echTel2	GCF_000313985.1	ALLPATHS v. R37599	189447	35	10276263	2860	1049531975	345, 2, JH980443:629844-630535	plot echTel2
185	2014	egrGar1	GCF_000687185.1	SOAPdenovo v. 1.6	74371	43	9954381	893	271113520	2791, 1, KK500861:718810-724392	plot egrGar1
186	2013	eidHel1	GCA_000465285.1	CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05	33439	35	1366001	126	36481318	7647, 43, AWHC01288168:1-15337	plot eidHel1
187	2012	eptFus1	GCF_000308155.1	ALLPATHS v. R40371	222087	35	13225570	2177	1173955475	211, 1, JH977672:6077044-6077466	plot eptFus1
188	2007	equCab2	tbd	tbd	393206	37	17857641	2842	2161091933	526, 1, chr14:85222625-85223677	plot equCab2
189	2014	equPrz1	GCA_000696695.1	SOAPdenovo v. 1.05	276230	49	14219094	107	801082402	1923, 1, KK950139:433764-437610	plot equPrz1
190	2012	eriEur2	GCF_000296755.1	allpaths v. R41008	861216	34	39995023	7216	6808639747	13780, 5, JH835378:10400-37964	plot eriEur2
191	2014	esoLuc1	GCA_000721915.1	AllPaths v. 43500	309026	36	12717997	109	633934424	1803, 1, KL593524:286555-290161	plot esoLuc1
192	2006	euaGli13	tbd	tbd	85054	35	3561209	981	360128068	95, 1, 4-7:24024058-24024248	plot euaGli13
193	2014	eurHel1	GCF_000690775.1	SOAPdenovo v. 1.6	48033	41	2646849	3690	271468700	462, 1, KK561721:27808-28732	plot eurHel1
194	2006	eutHer13	tbd	tbd	75114	37	3312319	1220	345926827	125, 1, 5-6:21163986-21164236	plot eutHer13
195	2013	falChe1	GCF_000337975.1	SOAPdenovo v. 1.4	33448	36	3028131	144	71160661	1589, 1, KB397979:787306-790484	plot falChe1
196	2013	falPer1	GCF_000337955.1	SOAPdenovo v. 1.4	32904	38	2747346	156	69981752	1888, 1, KB390863:6987566-6991342	plot falPer1
197	2011	felCat5	GCF_000181335.1	Celera Assembler v. 6.1	453806	34	18818004	7873	3800500393	238, 1, chrB2:9942275-9942751	plot felCat5
198	2014	felCat8	GCF_000181335.2	CABOG v. 6.2; MaSuRCA assembler v. 8.0; GAA v. 1.0	611459	36	31537253	5064	4215814492	482, 1, chrUn_AANG03063521v1:145-1109	plot felCat8
199	2002	fr1	tbd	tbd	65564	35	3413218	165	124234021	304, 1, chrUn:169005183-169005791	plot fr1
200	2004	fr2	tbd	tbd	104956	35	5519798	156	261084207	151, 1, chrUn:356162839-356163141	plot fr2
201	2011	fr3	GCF_000180615.1	tbd	105765	35	5702900	157	257018230	151, 1, HE592488:202-504	plot fr3
202	2014	fulGla1	GCF_000690835.1	SOAPdenovo v. 1.6	20338	37	1197675	93	36399474	576, 1, KK595554:8470-9622	plot fulGla1
203	2010	gadMor1	GCA_000231765.1	tbd	523023	30	17042881	24	573821154	131, 1, HE571852:62524-62786	plot gadMor1
204	2004	galGal2	tbd	tbd	157813	51	15224008	3723	846924205	208, 1, chr2:94743278-94743694	plot galGal2
205	2006	galGal3	tbd	tbd	243371	62	25066425	3004	1138149811	208, 1, chr2:97262115-97262531	plot galGal3
206	2011	galGal4	GCF_000002315.3	Celera Assembler v. 5.4	78961	39	4732239	2968	493569103	17591, 16, chrZ:21320544-21355741	plot galGal4
207	2015	galGal5	GCF_000002315.4	MHAP/PBcR v. 8.2beta	985564	36	47990278	1925	3490824745	17591, 16, chrZ:21461674-21496871	plot galGal5
208	2006	gasAcu1	tbd	tbd	131262	39	7836949	3635	770629287	296, 1, chrUn:59780312-59780904	plot gasAcu1
209	1880	gasAsc0	GCA_000180675.1	tbd	116031	39	6613325	1417	518945407	316, 1, contig_16726:674-1306	plot gasAsc0
210	2009	gavGan0	tbd	tbd	140159	79	22649136	5005	732648585	2263, 10, scaffold7460:20241-24776	plot gavGan0
211	2014	gavSte1	GCF_000690875.1	SOAPdenovo v. 1.6	24295	36	1352476	75	47417993	302, 1, KK611813:2739-3343	plot gavSte1
212	2012	geoFor1	GCF_000277835.1	SOAPdenovo v. 2.01	113187	37	6785044	204	268468600	1013, 1, JH739970:2776008-2778034	plot geoFor1
213	2006	gliRes13	tbd	tbd	31976	36	1385928	1661	143989628	95, 1, 4-7:15697982-15698172	plot gliRes13
214	2008	gorGor1	tbd	tbd	2032669	34	79855216	1003	5481108486	368, 1, Supercontig_0046707:4946-5682	plot gorGor1
215	2016	gorGor5	tbd	tbd	3555119	33	133654191	4102	21270991545	338, 1, CYUI01005848v1:13590-14266	plot gorGor5
216	2009	haeCon1	tbd	tbd	109810	42	5802860	1251.5	319005845	196, 1, Hcon_Contig0025586:3955-4347	plot haeCon1
217	2013	haeCon2	tbd	tbd	53818	43	3892613	570	187299643	2147, 1, scaffold_1557:10532-14826	plot haeCon2
218	2014	halAlb1	GCF_000691405.1	SOAPdenovo v. 1.6	13685	36	754065	301	41720730	548, 2, KK653364:30569-31666	plot halAlb1
219	2014	halLeu1	GCF_000737465.1	SOAPdenovo2 v. May 2014	16099	40	1241068	4586	98353830	79, 1, KL869431:1084034-1084192	plot halLeu1
220	2011	hapBur1	GCF_000239415.1	ALLPATHS-LG v. R35951	34584	37	2342045	3524.5	202958431	10390, 20, JH425331:1373378-1394177	plot hapBur1
221	2011	hetBac1	GCA_000223415.1	Celera assembler v. 6.0	3302	51	353946	673	12041725	317, 1, GL996135v1:102345-102979	plot hetBac1
222	2012	hetGla2	GCF_000247695.1	AllPaths v. R39605	103053	34	6024624	6941	791605735	158, 1, JH602100:6973404-6973720	plot hetGla2
223	2006	homIni14	tbd	tbd	986594	33	36270527	7838	8265721353	294, 1, chr20:9839450-9840038	plot homIni14
224	1880	homNea0	tbd	tbd	148	30	4725	14.5	2669	37, 1, 151586_3339_2553:20-94	plot homNea0
226	2012	jacJac1	GCF_000280705.1	ALLPATHS v. R41689 HAPLOIDIFY=True	430190	34	18722704	6295	3230508925	276, 1, JH725590:3244288-3244840	plot jacJac1
227	2006	lauRas13	tbd	tbd	43311	36	1891314	1493	210427636	125, 1, 5-6:22761072-22761322	plot lauRas13
228	2014	lepDis1	GCF_000691785.1	SOAPdenovo v. 1.6	16795	33	749994	94	31438992	199, 1, JJRK01010260:4452-4850	plot lepDis1
229	2011	lepOcu1	GCF_000242695.1	AllPaths v. R38293	77276	37	4579890	1084	350156295	488, 2, chrLG5:14840992-14841969	plot lepOcu1
230	2013	letCam1	GCA_000466285.1	Newbler v. 2.7	768187	35	32420899	153	1525909318	207, 1, KE997215:997-1411	plot letCam1
231	1880	linHum0	GCF_000217595.1	CABOG v. 5.3	42080	41	2313367	5018	259661061	101, 1, NW_012160424:64875-65077	plot linHum0
232	2013	lipVex1	GCF_000442215.1	SOAPdenovo v. 2.01	514863	35	27315468	8421	4503138248	6076, 1, KE559913:905157-917309	plot lipVex1
233	2012	loaLoa1	GCA_000183805.3	Newbler v. 2.1-PreRelease-4/28/2009	15889	37	1294459	188	16478676	109, 1, JH717180v1:404-622	plot loaLoa1
234	2014	manPen1	GCA_000738955.1	SOAPdenovo v. May 2014	304420	55	33766689	853	887951462	4944, 1, KN012191:2418-12306	plot manPen1
235	2014	manVit1	GCF_000692015.1	SOAPdenovo v. 1.6	75103	35	4570292	206	245456943	5268, 1, KK733349:4046063-4056599	plot manVit1
237	2012	mayZeb1	GCF_000238955.1	AllPaths v. R37043	48899	38	3205287	4159	307830483	9605, 105, JH720664:938440-957754	plot mayZeb1
238	2013	megLyr1	GCA_000465345.1	CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05	25192	34	1014702	112	35852812	149, 1, KI041466:2479-2777	plot megLyr1
239	2009	melGal1	tbd	tbd	25253	45	1794885	2825	133788059	169, 1, chr3:54352580-54352918	plot melGal1
240	2014	melGal5	GCF_000146605.2	MaSuRCA v. 1.9.2	101903	36	4643970	197	188019328	173, 1, chrUn_NW_011217171v1:1-347	plot melGal5
241	2008	melHap1	GCA_000172435.1	tbd	12515	41	832837	375	21806223	157, 1, MhA1_Contig2844:850-1164	plot melHap1
242	2008	melInc1	GCA_000180415.1	tbd	19330	40	1244828	558	47252172	183, 1, Minc_Contig6373:3669-4035	plot melInc1
243	2008	melInc2	tbd	tbd	22743	41	1594354	1067	83086394	183, 1, MiV1ctg2756:3669-4035	plot melInc2
244	2011	melUnd1	GCF_000238935.1	Celera v. 6.1	99875	41	5463070	6271	754338919	120, 1, JH556605:5210251-5210491	plot melUnd1
245	2014	merNub1	GCF_000691845.1	SOAPdenovo v. 1.6	37279	43	2280064	174	103616988	543, 1, KK705997:21022-22108	plot merNub1
246	2013	mesAur1	GCF_000349665.1	allpaths v. R44683	254929	34	11386675	3099	1465851012	529, 2, KB708261:1360324-1361383	plot mesAur1
247	2014	mesUni1	GCF_000695765.1	SOAPdenovo v. 1.6	52863	36	2585696	257	120590969	271, 1, JJRI01098248:16372-16914	plot mesUni1
248	2007	micMur1	GCA_000165445.1	tbd	318135	36	16408745	3194	1669326577	302, 1, scaffold_11535:27481-28085	plot micMur1
249	2015	micMur2	GCF_000165445.1	AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9	1102998	38	61135566	7563	8957944918	3388, 3, KQ058422v1:91440-98218	plot micMur2
250	2017	micMur3	GCF_000165445.2	AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9; Lachesis v. shendurelab-LACHESIS-2151de9; BioNano IrysSolve v. 2.1	1168691	38	66907392	7729	9630726519	185, 1, chr5:43933509-43933879	plot micMur3
251	2012	micOch1	GCF_000317375.1	allpaths v. R41985 HAPLOIDIFY=True SPRS_WRITE_SEPS=True	335553	35	15776999	2433	1838809952	278, 1, chrLG5:33413026-33413582	plot micOch1
252	2005	mm7	tbd	tbd	796902	35	37088826	6053	5781640680	499, 1, chr11:108519568-108520566	plot mm7
253	2006	mm8	tbd	tbd	818602	36	37812754	6175	5992918402	499, 1, chr11:108226617-108227615	plot mm8
254	2007	mm9	tbd	tbd	841682	36	38909060	6202	6169636600	499, 1, chr11:108271841-108272839	plot mm9
255	2013	musDom2	GCF_000371365.1	AllPathsLG v. September 2012	575203	36	27589830	1941	2513509860	2028, 1, KB856326:64184-68240	plot musDom2
256	2011	musFur1	GCA_000215625.1	ALLPATHS-LG v. R36167	309552	34	12256854	8370	2709245222	446, 1, GL896951:5218180-5219072	plot musFur1
257	2013	myoBra1	GCF_000412655.1	SOAP de novo v. 2.04	508698	38	40839066	1070	2100859228	3719, 1, KE163224:7566116-7573554	plot myoBra1
258	2012	myoDav1	GCF_000327345.1	SOAPdenovo v. 1.06	303669	37	20701160	2186	1562115676	595, 1, KB109238:3742816-3744006	plot myoDav1
259	2006	myoLuc1	tbd	tbd	252160	38	14746446	2605	1175238045	253, 1, scaffold_116983:3336-3842	plot myoLuc1
260	2010	myoLuc2	GCF_000147115.1	Arachne v. Dev. Jan 2010	404463	36	18255536	5420	2827568613	312, 1, GL430179:150290-150914	plot myoLuc2
261	2015	nanPar1	GCA_000935625.1	SOAPdenovo v. 1.06	725822	37	53289164	248	1815148366	7565, 1, KN905954v1:74233-89363	plot nanPar1
262	2013	necAme1	GCF_000507365.1	Newbler v. MapAsmResearch-04/19/2010-patch-08/17/2010	30870	43	1735538	1580	123448969	93, 1, KI659398v1:132-318	plot necAme1
263	2007	nemVec1	tbd	tbd	540729	40	30645450	589	1501673463	353, 1, scaffold_201:423580-424286	plot nemVec1
264	2011	neoBri1	GCF_000239395.1	ALLPATHS-LG v. R36800	62939	46	6697998	1655	274117853	8242, 20, JH422273:8382583-8399086	plot neoBri1
265	2014	nipNip1	GCF_000708225.1	SOAPdenovo v. 1.6	32623	43	3676893	251	104452416	1496, 1, KL409846:432608-435600	plot nipNip1
266	2014	notCor1	GCF_000735185.1	Celera Assembler v. 7.0	164483	34	7109993	199	393266432	407, 1, KL665414:596304-597118	plot notCor1
267	2012	ochPri3	GCF_000292845.1	Allpaths v. R41206	269479	35	14417226	6664	2042363947	5916, 11, JH802070:23930294-23942136	plot ochPri3
268	2013	odoRosDiv1	GCA_000321225.1	AllPaths v. 41070; Atlas-link v. 1.0; Atlas-gapfill v. 2.2	386270	34	17141224	7248	3092233269	336, 1, KB228946:1914846-1915518	plot odoRosDiv1
269	2013	oncVol1	GCA_000499405.1	tbd	5247	39	423838	2124	28089581	739, 1, HG738137v1:12037947-12039425	plot oncVol1
270	2014	opiHoa1	GCF_000692075.1	SOAPdenovo v. 1.6	75782	40	6783674	4083	456471575	1119, 1, KK734928:246587-248825	plot opiHoa1
271	2013	orcOrc1	GCF_000331955.2	AllPaths v. 41070; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2	355274	35	15657594	8151	3040130649	4550, 14, NW_004438537v1:3574224-3583337	plot orcOrc1
272	2011	oreNil1	tbd	tbd	80799	39	4892346	6067	586359236	9755, 32, GL831139:3510855-3530396	plot oreNil1
273	2007	ornAna1	GCF_000002275.2	tbd	843770	36	52838231	2857	4750437899	279, 1, Contig10711:4568-5126	plot ornAna1
274	2007	ornAna2	GCA_000002275.2	tbd	843770	36	52838231	2857	4750437899	279, 1, chrUn_DS187984v1:4568-5126	plot ornAna2
275	2009	oryCun2	GCF_000003625.3	tbd	1022805	35	43458140	7982	8671655620	355, 1, chrX:61423000-61423710	plot oryCun2
276	2006	oryLat1	tbd	tbd	191645	40	12487530	1210	620191379	379, 1, chr9:5041681-5042439	plot oryLat1
277	2005	oryLat2	tbd	tbd	189087	40	12356700	1234	592910738	379, 1, chr9:5041681-5042439	plot oryLat2
278	2011	otoGar3	GCF_000181295.1	ALLPATHS-LG v. R35710	400962	34	16217113	5408	2796782144	7275, 20, GL873525:45030822-45045391	plot otoGar3
279	2010	oviAri1	GCA_000005525.1	tbd	14042	49	1013366	214	36573585	264, 1, chr15:8985870-8986398	plot oviAri1
280	2012	oviAri3	GCF_000298735.1	SOAPdenovo v. 1.03	786369	35	35783861	7004	6099422199	7782, 1, chr21:31441666-31457230	plot oviAri3
281	2013	panHod1	GCF_000400835.1	SOAPdenovo v. 2.1	521516	35	25591307	8191	4466818919	3120, 1, KE108970:1986445-1992685	plot panHod1
282	2013	panRed1	GCA_000341325.1	Velvet v. 1.2.07	23300	42	1084666	1396	66559726	101, 1, KB454925:8492-8694	plot panRed1
283	2013	panTig1	GCF_000464555.1	SOAPdenovo v. 08-Jul-2011	289892	33	13318045	7625	2368098055	1135, 1, KE721593:7259595-7261865	plot panTig1
284	2014	pelCri1	GCF_000687375.1	SOAPdenovo v. 1.6	42891	37	2053042	265	127612523	574, 1, KK474798:35527-36675	plot pelCri1
285	2011	pelSin1	GCF_000230535.1	SOAPdenovo v. 1.05	282804	42	32017871	2114.5	1334725849	4166, 1, JH210925:2745573-2753905	plot pelSin1
286	2013	perManBai1	GCF_000500345.1	Newbler v. 2.3 and 2.5; AllPaths v. 41070; ATLAS-gapfill v. 2.2; ATLAS-link v. 1.0	806105	37	49741488	3501	4676973953	266, 1, KI615341:3157564-3158096	plot perManBai1
287	2007	petMar1	tbd	tbd	855653	36	38339527	201	932728649	362, 1, Contig99174:237-961	plot petMar1
288	2010	petMar2	GCA_000148955.1	Arachne v. 3.2	836219	37	38092404	692	2324558773	363, 1, GL498477:1987-2713	plot petMar2
289	2014	phaCar1	GCF_000708925.1	SOAPdenovo v. 1.6	41541	34	1992939	36	26355615	779, 1, KL418261:30029-31587	plot phaCar1
290	2014	phaLep1	GCF_000687285.1	SOAPdenovo v. 1.6	26611	38	1718609	216	85779441	1077, 1, KK455387:47187-49341	plot phaLep1
291	2014	phoRub1	GCA_000687265.1	SOAPdenovo v. 1.6	17140	43	1055248	135	39934970	526, 1, KK424259:7588-8640	plot phoRub1
292	2013	phyCat1	GCF_000472045.1	AllPaths-LG v. January 2013	261153	35	10801080	8197	2241115729	5565, 1, KI411098:797892-809022	plot phyCat1
293	2014	picPub1	GCF_000699005.1	SOAPdenovo v. 1.6	397798	36	17968999	7796	3299119050	4915, 3, KL215520:252741-262573	plot picPub1
294	2013	poeFor1	GCF_000485575.1	AllPaths-LG v. July 2013	161806	52	28441594	4650	990605574	1886, 1, KI520679:7484-11256	plot poeFor1
295	2014	poeRet1	tbd	tbd	71291	38	4816409	1511	343849361	8790, 4, chrLG5:27506035-27523618	plot poeRet1
296	2014	priExs1	tbd	tbd	33878	44	2639333	1128	98936342	1626, 1, scaffold830:51430-54682	plot priExs1
297	2007	priPac1	tbd	tbd	29257	43	1929264	448	80615899	500, 1, chrUn:71534792-71535792	plot priPac1
298	2008	priPac2	GCA_000180635.1	tbd	19318	39	1050200	259	25863820	500, 1, ABKE01002096:3239-4239	plot priPac2
299	2014	priPac3	tbd	tbd	36759	40	2176431	321	82136541	500, 1, Ppa_Contig5:941324-942324	plot priPac3
300	2013	pseHum1	GCF_000331425.1	SOAPdenovo v. 1.5	140033	36	7836448	130	200423267	7517, 10, KB221191:4083820-4098863	plot pseHum1
301	2012	pteAle1	GCA_000325575.1	SOAPdenovo v. 1.06	114693	37	9365161	223	316324647	1333, 1, KB031158:55901168-55903834	plot pteAle1
302	2014	pteGut1	GCF_000699245.1	SOAPdenovo v. 1.6	41594	36	2007893	100	106772284	534, 1, JMFR01060883:1891-2959	plot pteGut1
303	2013	ptePar1	GCA_000465405.1	CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05	21621	32	935645	268	31185376	1327, 6, AWGZ01430664:1-2660	plot ptePar1
304	2008	pteVam1	GCA_000151845.1	tbd	266592	43	16837304	1547	867093676	194, 1, scaffold_275:208852-209240	plot pteVam1
305	2011	punNye1	GCF_000239375.1	ALLPATHS-LG v. R37016	36249	38	2385815	3630	214952201	5131, 20, JH419262:1608400-1618681	plot punNye1
306	2014	pygAde1	GCA_000699105.1	SOAPdenovo v. 1.6	38534	46	4145677	2165.5	202245057	2147, 1, KL225502:93242-97536	plot pygAde1
307	2013	pytBiv1	GCF_000186305.1	Soap deNovo v. March 2012	167510	47	14323626	217	396468667	235, 1, KE953144:259222-259692	plot pytBiv1
308	2012	repBase0	tbd	tbd	54	39	2426	81.5	7619	70, 1, MER51A:232-372	plot repBase0
309	2012	repBase1	tbd	tbd	73	39	3249	77	9691	70, 1, MER51A:232-372	plot repBase1
310	1880	repBase2	tbd	tbd	51	40	2203	79	6907	70, 1, MER51A:232-372	plot repBase2
312	2005	rheMac1	tbd	tbd	674143	34	28294758	3903	4022554742	166, 1, SCAFFOLD105044:90895-91227	plot rheMac1
313	2013	rhiFer1	GCA_000465495.1	CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05	30159	33	1238560	174	41741562	172, 1, AWHA01239258:1699-2043	plot rhiFer1
314	1880	ricCom1	GCF_000151685.1	tbd	430308	35	18638247	2948	2156357980	460, 1, EQ974418:17730-18650	plot ricCom1
315	2003	rn3	tbd	tbd	1202899	39	66661811	5386	8488809019	230, 1, chr1:37917795-37918255	plot rn3
316	2004	rn4	tbd	tbd	1201940	39	66433547	5409	8492561356	230, 1, chr1:37914850-37915310	plot rn4
317	2016	rouAeg1	GCF_001466805.2	SparseAssembler v. OCTOBER-2015; DBG2OLC v. OCTOBER-2015; LINKS v. 1.5.1; L_RNA_Scaffolder v. OCTOBER-2015; SSPACE v. 3.0	74090	36	4591683	5517	522939887	410, 2, NW_015493119v1:122550-123371	plot rouAeg1
318	2003	sacCer1	tbd	tbd	666	45	76615	1914.5	2711249	50, 1, chr7:519107-519207	plot sacCer1
319	2008	sacCer2	tbd	tbd	669	45	76812	1868	2711600	71, 1, chrX:120898-121040	plot sacCer2
320	2011	sacCer3	GCF_000146045.2	tbd	669	45	78716	1868	2711582	1988, 10, chrVIII:212266-216251	plot sacCer3
321	2011	saiBol1	GCA_000235385.1	AllPaths v. R37830	526235	34	21114308	7999	4457057956	278, 1, JH378108:18778847-18779403	plot saiBol1
322	2013	sebNig1	GCA_000475235.1	tbd	344468	43	18020844	94	249080272	492, 1, AUPR01114153:357-1341	plot sebNig1
323	2013	sebRub1	GCA_000475215.1	SOAPdenovo v. 1.05	299208	38	14417679	139	352997550	408, 1, KI445670:61530-62346	plot sebRub1
324	2014	serCan1	GCF_000534875.1	tbd	201507	36	9350381	157	357279352	3222, 1, HG009216:7215262-7221706	plot serCan1
325	2008	sorAra2	GCF_000181275.1	Allpaths v. R41070	410333	34	17425137	5940	2962830748	236, 1, JH798205:592464-592936	plot sorAra2
326	2011	speTri2	GCF_000236235.1	ALLPATHS v. R37591	213421	34	10318652	2662	1156742500	204, 1, JH393366:4794989-4795397	plot speTri2
327	2014	stePar1	GCF_000690725.1	ALLPATHS-LG v. August 2013	96483	40	8151514	3673	549500672	2624, 1, KK581067:134955-140203	plot stePar1
328	1880	strCam0	tbd	tbd	23662	45	2730974	666	94888209	1134, 1, superscaffold9:6014874-6017142	plot strCam0
329	2014	strCam1	GCF_000698965.1	SOAPdenovo v. 1.6	23599	45	2718563	646	93976596	1134, 1, KL206988:717376-719644	plot strCam1
330	2005	strPur1	tbd	tbd	658932	40	35574440	847.5	1824767726	956, 1, Scaffold18311:2619-4531	plot strPur1
331	2006	strPur2	tbd	tbd	611722	39	30968979	1453	2323533345	956, 1, Scaffold47464:201872-203784	plot strPur2
332	2009	strPur3	tbd	tbd	689739	40	35781206	1763	2733632009	956, 1, Scaffold85:237230-239142	plot strPur3
333	2011	strPur4	GCF_000002235.3	Atlas v. WGS for Sanger Assembly, Atlas-Link and Atlas-GapFill for SOLiD and Illumina improvement	888256	42	54558021	2360	3918297070	956, 1, Scaffold382:244159-246071	plot strPur4
334	2011	strRat1	tbd	tbd	9910	40	540468	1077	26058414	113, 1, RATTI_contig_57682:4110-4336	plot strRat1
335	2014	strRat2	GCA_001040885.1	tbd	8546	41	482721	2233	37502032	67, 1, chrUn_LN609483v1:243-377	plot strRat2
337	1880	taeGut0	tbd	tbd	597003	49	43955858	3833	2936709220	209, 1, Contig47:5328655-5329073	plot taeGut0
338	2008	taeGut1	tbd	tbd	602657	49	44658308	3557	2849213000	209, 1, chrZ:28813941-28814359	plot taeGut1
339	2013	taeGut2	GCF_000151805.1	PCAP v. 2008	602028	49	44591081	3541	2830875406	209, 1, chrZ:28813941-28814359	plot taeGut2
341	2013	takFla1	GCA_000400755.1	HAPs v. 0.2.2	97724	36	6776388	184	251435705	503, 1, KE121297:329-1335	plot takFla1
342	2014	tauEry1	GCF_000709365.1	SOAPdenovo v. 1.6	58294	35	2621924	2194	291694166	227, 1, JNOY01082112:3268-3722	plot tauEry1
343	2004	tetNig1	tbd	tbd	132260	38	9178877	3055	661840431	413, 1, chrUn_random:43732955-43733781	plot tetNig1
344	2007	tetNig2	tbd	tbd	130250	38	9072570	3013	657839855	413, 1, chrUn_random:35610230-35611056	plot tetNig2
345	2014	tinGut1	GCF_000705375.1	SOAPdenovo v. 1.6	43221	38	2742653	279	110109614	416, 1, KL400833:106660-107492	plot tinGut1
346	2014	tinGut2	GCF_000705375.1	SOAPdenovo v. 1.6	43210	38	2741340	279	110101482	416, 1, KL895505:106660-107492	plot tinGut2
347	2005	triCas1	tbd	tbd	78796	41	4117576	794	170185880	307, 1, Reptig797:115-729	plot triCas1
348	2005	triCas2	tbd	tbd	77889	41	4122780	885	196279053	192, 1, singleUn_1374:29986-30370	plot triCas2
349	2011	triSpi1	GCF_000181795.1	PCAP v. January 12, 2007	11343	54	1176023	4572	74727382	98, 1, GL622792v1:5540185-5540381	plot triSpi1
350	2014	triSui1	GCA_000701005.1	SOAPdenovo v. 2	17372	45	1593967	2042.5	75416120	501, 1, KL363185v1:221782-222784	plot triSui1
351	2008	turTru1	tbd	tbd	563956	39	29728359	4334	3598266237	726, 1, scaffold_99142:224631-226083	plot turTru1
352	2011	turTru2	GCF_000151865.2	Atlas, Atlas-Link, Atlas-GapFill v. June 2011	776833	45	45568301	691	2466469760	652, 1, JH474081:172050-173354	plot turTru2
353	2014	tytAlb1	GCF_000687205.1	SOAPdenovo v. 1.6	15140	33	776246	81	23744286	199, 1, JJRD01024771:5513-5911	plot tytAlb1
354	2014	ursMar1	GCF_000687225.1	SOAPdenovo v. 1.05	311409	35	14157428	7601	2530787255	5007, 6, KK498603:22100903-22110922	plot ursMar1
355	2007	venter1	tbd	tbd	930808	33	34824482	7414	7568565462	475, 1, chr14:54149213-54150163	plot venter1
356	2013	vicPac2	GCF_000164845.1	Newbler v. May-2012	171221	45	11863115	873	480695662	170, 1, KB632444:13257033-13257373	plot vicPac2
357	2004	xenTro1	tbd	tbd	1073717	40	65548900	216	2854287515	347, 1, scaffold_3418:6326-7020	plot xenTro1
358	2005	xenTro2	tbd	tbd	1034566	40	64677537	219	2820134241	548, 1, scaffold_68:2539823-2540919	plot xenTro2
359	2009	xenTro3	tbd	tbd	1034357	40	64662644	219	2819484140	548, 1, GL172704:2539823-2540919	plot xenTro3
360	2012	xenTro7	GCF_000004195.2	ARACHNE v. 20071016_modified	1100470	39	53428011	229	2808691507	3560, 2, KB021656:75384527-75391648	plot xenTro7
361	2016	xenTro9	GCF_000004195.3	Meraculous v. May-2013	967829	39	47452193	241	2585384269	3560, 2, chr6:35780447-35787568	plot xenTro9
362	2012	xipMac1	GCF_000241075.1	PCAP v. 3/30/09; Newbler v. MapAsmResearch-02/17/2010	39708	35	1764516	506	136874274	119, 1, JH557910:3615-3853	plot xipMac1
364	2013	zonAlb1	GCF_000385455.1	Allpaths-LG v. Feb-2013	220251	35	9228906	369	407868591	2060, 1, KB913045:8123897-8128017	plot zonAlb1

assemblies with zero duplicate gap sequences

count	year	dbName	ncbiAsmId	assembly size	assembly method
001	2014	bunEbo1	GCF_000889155.1	18940	tbd
002	2014	eboVir1	tbd	870153	tbd
003	2014	eboVir3	tbd	18957	tbd
004	2002	hpv1	GCF_000862685.1	8033	tbd
005	2014	marVir1	tbd	38225	tbd
006	2014	resEbo1	GCF_000854085.1	18891	tbd
007	2014	sudEbo1	GCF_000855585.1	18875	tbd
008	2014	taiEbo1	GCF_000888475.1	18935	tbd
009	2014	zaiEbo1	GCF_000848505.1	18959	tbd

TandemDups: Difference between revisions

Revision as of 20:59, 22 May 2017

Contents

methods

table features

tandemDups table statistics

assemblies with zero duplicate gap sequences

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@@ Line 6: / Line 6: @@
 The procedure to find these sequences is as follows:
-* generate 29 base kmers for the entire genome, allow only
+* generate 29 base kmers for the entire genome, allow only kmers with bases: '''A C T G''', no '''N's''' allowed.
-  kmers with bases: '''A C T G''', no '''N's''' allowed.
+* pair up identical kmers with at least one base separation and up to 20,000 bases separation.  This ''separation'' sequence is referred to here as the ''gap'' in this document.
-* pair up identical kmers with at least one base separation
+* collapse overlapping kmer pairs when they are the same size of sequence and the same spacing between the pairs.  This procedure preserves the definition of ''duplicated identical'' pairs.
-  and up to 20,000 bases separation.  This ''separation'' sequence
+* the resulting pairs can now be longer sequences with smaller separation then the constituent pairs
-  is referred to here as the ''gap'' in this document.
+* final result selects sizes of 30 bases or more for the size of the paired sequence, and at least one base remaining as a separation gap.
-* collapse overlapping kmer pairs when they are the same size
+* collapsed pairs that close the gap are discarded.  They appear to indicate simple repeat sequences when this happens.  It would be interesting to have this result available, but that is not available at this time.
-  of sequence and the same spacing between the pairs.  This procedure
-  preserves the definition of ''duplicated identical'' pairs.
-* the resulting pairs can now be longer sequences with smaller
-  separation then the constituent pairs
-* final result selects sizes of 30 bases or more for the size
-  of the paired sequence, and at least one base remaining as
-  a separation gap.
-* collapsed pairs that close the gap are discarded.  They appear to
-  indicate simple repeat sequences when this happens.  It would
-  be interesting to have this result available, but that is not
-  available at this time.
 The reason for starting with 29 base sized pairs and then selecting
@@ Line 530: / Line 519: @@
 |-
 | 051
+| 2009
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau5 bosTau5]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 1143604
+| style='text-align:right'| 37
+| style='text-align:right'| 53681590
+| &nbsp;
+| style='text-align:right'| 9372
+| style='text-align:right'| 10891150076
+| 474,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau5&position=chr1:65205480-65206428 chr1:65205480-65206428]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau5 plot bosTau5]
+|-
+| 052
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau6 bosTau6]
@@ Line 543: / Line 546: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau6 plot bosTau6]
 |-
-| 052
+| 053
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau8 bosTau8]
@@ Line 557: / Line 560: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau8 plot bosTau8]
 |-
-| 053
+| 054
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTauMd3 bosTauMd3]
@@ Line 571: / Line 574: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTauMd3 plot bosTauMd3]
 |-
-| 054
+| 055
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=braFlo2 braFlo2]
@@ Line 585: / Line 588: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=braFlo2 plot braFlo2]
 |-
-| 055
+| 056
 | 1880
 | style='text-align:center;'| braRap1
@@ Line 599: / Line 602: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=braRap1 plot braRap1]
 |-
-| 056
+| 057
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bruMal1 bruMal1]
@@ Line 613: / Line 616: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bruMal1 plot bruMal1]
 |-
-| 057
+| 058
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bruMal2 bruMal2]
@@ Line 627: / Line 630: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bruMal2 plot bruMal2]
 |-
-| 058
+| 059
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bucRhi1 bucRhi1]
@@ Line 641: / Line 644: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bucRhi1 plot bucRhi1]
 |-
-| 060
+| 061
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=burXyl1 burXyl1]
@@ Line 655: / Line 658: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=burXyl1 plot burXyl1]
 |-
-| 061
+| 062
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeAng1 caeAng1]
@@ Line 669: / Line 672: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeAng1 plot caeAng1]
 |-
-| 062
+| 063
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeAng2 caeAng2]
@@ Line 683: / Line 686: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeAng2 plot caeAng2]
 |-
-| 063
+| 064
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap1 caeJap1]
@@ Line 697: / Line 700: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap1 plot caeJap1]
 |-
-| 064
+| 065
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap2 caeJap2]
@@ Line 711: / Line 714: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap2 plot caeJap2]
 |-
-| 065
+| 066
 | 1880
 | style='text-align:center;'| caeJap2a
@@ Line 725: / Line 728: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap2a plot caeJap2a]
 |-
-| 066
+| 067
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap3 caeJap3]
@@ Line 739: / Line 742: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap3 plot caeJap3]
 |-
-| 067
+| 068
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap4 caeJap4]
@@ Line 753: / Line 756: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap4 plot caeJap4]
 |-
-| 068
+| 069
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb1 caePb1]
@@ Line 767: / Line 770: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb1 plot caePb1]
 |-
-| 069
+| 070
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb2 caePb2]
@@ Line 781: / Line 784: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb2 plot caePb2]
 |-
-| 070
+| 071
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb3 caePb3]
@@ Line 795: / Line 798: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb3 plot caePb3]
 |-
-| 071
+| 072
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem1 caeRem1]
@@ Line 809: / Line 812: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem1 plot caeRem1]
 |-
-| 072
+| 073
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem2 caeRem2]
@@ Line 823: / Line 826: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem2 plot caeRem2]
 |-
-| 073
+| 074
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem3 caeRem3]
@@ Line 837: / Line 840: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem3 plot caeRem3]
 |-
-| 074
+| 075
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem4 caeRem4]
@@ Line 851: / Line 854: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem4 plot caeRem4]
 |-
-| 075
+| 076
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp111 caeSp111]
@@ Line 865: / Line 868: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp111 plot caeSp111]
 |-
-| 076
+| 077
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp51 caeSp51]
@@ Line 879: / Line 882: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp51 plot caeSp51]
 |-
-| 077
+| 078
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp91 caeSp91]
@@ Line 893: / Line 896: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp91 plot caeSp91]
 |-
-| 078
+| 079
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calAnn1 calAnn1]
@@ Line 907: / Line 910: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calAnn1 plot calAnn1]
 |-
-| 079
+| 080
+| 2009
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000004665.1/ GCF_000004665.1]
+| PCAP v. 2009
+| style='text-align:right'| 933429
+| style='text-align:right'| 35
+| style='text-align:right'| 41296063
+| &nbsp;
+| style='text-align:right'| 4319
+| style='text-align:right'| 6020954211
+| 342,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3&position=chrUn_GL289980:2548-3232 chrUn_GL289980:2548-3232]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calJac3 plot calJac3]
+|-
+| 081
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calMil1 calMil1]
@@ Line 921: / Line 938: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calMil1 plot calMil1]
 |-
-| 080
+| 082
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=camFer1 camFer1]
@@ Line 935: / Line 952: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=camFer1 plot camFer1]
 |-
-| 081
+| 083
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam1 canFam1]
@@ Line 949: / Line 966: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFam1 plot canFam1]
 |-
-| 082
+| 084
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam2 canFam2]
@@ Line 963: / Line 980: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFam2 plot canFam2]
 |-
-| 083
+| 085
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]
@@ Line 977: / Line 994: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFam3 plot canFam3]
 |-
-| 085
+| 086
+| 2003
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFamPoodle1 canFamPoodle1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000181415.1/ GCA_000181415.1]
+| tbd
+| style='text-align:right'| 46485
+| style='text-align:right'| 34
+| style='text-align:right'| 1777637
+| &nbsp;
+| style='text-align:right'| 138
+| style='text-align:right'| 18530637
+| 210,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFamPoodle1&position=AACN010470517:102-522 AACN010470517:102-522]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFamPoodle1 plot canFamPoodle1]
+|-
+| 087
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canHg12 canHg12]
@@ Line 991: / Line 1,022: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canHg12 plot canHg12]
 |-
-| 086
+| 088
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capCar1 capCar1]
@@ Line 1,005: / Line 1,036: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=capCar1 plot capCar1]
 |-
-| 087
+| 089
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capHir1 capHir1]
@@ Line 1,019: / Line 1,050: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=capHir1 plot capHir1]
 |-
-| 088
+| 090
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=carCri1 carCri1]
@@ Line 1,033: / Line 1,064: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=carCri1 plot carCri1]
 |-
-| 089
+| 091
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]
@@ Line 1,047: / Line 1,078: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cavPor3 plot cavPor3]
 |-
-| 090
+| 092
 | 2002
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb1 cb1]
@@ Line 1,061: / Line 1,092: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb1 plot cb1]
 |-
-| 091
+| 093
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb2 cb2]
@@ Line 1,075: / Line 1,106: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb2 plot cb2]
 |-
-| 092
+| 094
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb3 cb3]
@@ Line 1,089: / Line 1,120: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb3 plot cb3]
 |-
-| 093
+| 095
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb4 cb4]
@@ Line 1,103: / Line 1,134: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb4 plot cb4]
 |-
-| 094
+| 096
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce10 ce10]
@@ Line 1,117: / Line 1,148: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce10 plot ce10]
 |-
-| 095
+| 097
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce11 ce11]
@@ Line 1,131: / Line 1,162: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce11 plot ce11]
 |-
-| 096
+| 098
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce2 ce2]
@@ Line 1,145: / Line 1,176: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce2 plot ce2]
 |-
-| 097
+| 099
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce3 ce3]
@@ Line 1,159: / Line 1,190: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce3 plot ce3]
 |-
-| 098
+| 100
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce4 ce4]
@@ Line 1,173: / Line 1,204: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce4 plot ce4]
 |-
-| 099
+| 101
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce5 ce5]
@@ Line 1,187: / Line 1,218: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce5 plot ce5]
 |-
-| 100
+| 102
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce6 ce6]
@@ Line 1,201: / Line 1,232: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce6 plot ce6]
 |-
-| 101
+| 103
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce7 ce7]
@@ Line 1,215: / Line 1,246: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce7 plot ce7]
 |-
-| 102
+| 104
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce8 ce8]
@@ Line 1,229: / Line 1,260: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce8 plot ce8]
 |-
-| 103
+| 105
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce9 ce9]
@@ Line 1,243: / Line 1,274: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce9 plot ce9]
 |-
-| 104
+| 106
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1]
@@ Line 1,257: / Line 1,288: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cerSim1 plot cerSim1]
 |-
-| 105
+| 107
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc1 chaVoc1]
@@ Line 1,271: / Line 1,302: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chaVoc1 plot chaVoc1]
 |-
-| 106
+| 108
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc2 chaVoc2]
@@ Line 1,285: / Line 1,316: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chaVoc2 plot chaVoc2]
 |-
-| 107
+| 109
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cheMyd1 cheMyd1]
@@ Line 1,299: / Line 1,330: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cheMyd1 plot cheMyd1]
 |-
-| 108
+| 110
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chiLan1 chiLan1]
@@ Line 1,313: / Line 1,344: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chiLan1 plot chiLan1]
 |-
-| 109
+| 111
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab1 chlSab1]
@@ Line 1,327: / Line 1,358: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chlSab1 plot chlSab1]
 |-
-| 110
+| 112
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab2 chlSab2]
@@ Line 1,341: / Line 1,372: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chlSab2 plot chlSab2]
 |-
-| 111
+| 113
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlUnd1 chlUnd1]
@@ Line 1,355: / Line 1,386: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chlUnd1 plot chlUnd1]
 |-
-| 112
+| 114
+| 2008
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000164785.1/ GCA_000164785.1]
+| tbd
+| style='text-align:right'| 209811
+| style='text-align:right'| 36
+| style='text-align:right'| 9540548
+| &nbsp;
+| style='text-align:right'| 431
+| style='text-align:right'| 262030496
+| 307,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1&position=scaffold_3919:20103-20717 scaffold_3919:20103-20717]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=choHof1 plot choHof1]
+|-
+| 115
+| 2011
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 281953
+| style='text-align:right'| 43
+| style='text-align:right'| 16725223
+| &nbsp;
+| style='text-align:right'| 1275
+| style='text-align:right'| 1210278039
+| 255,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1&position=JH584700:738019-738529 JH584700:738019-738529]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chrPic1 plot chrPic1]
+|-
+| 116
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic2 chrPic2]
@@ Line 1,369: / Line 1,428: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chrPic2 plot chrPic2]
 |-
-| 113
+| 117
 | 2002
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci1 ci1]
@@ Line 1,383: / Line 1,442: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci1 plot ci1]
 |-
-| 114
+| 118
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci2 ci2]
@@ Line 1,397: / Line 1,456: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci2 plot ci2]
 |-
-| 115
+| 119
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci3 ci3]
@@ Line 1,411: / Line 1,470: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci3 plot ci3]
 |-
-| 116
+| 120
 | 2003
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav1 cioSav1]
@@ Line 1,425: / Line 1,484: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cioSav1 plot cioSav1]
 |-
-| 117
+| 121
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav2 cioSav2]
@@ Line 1,439: / Line 1,498: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cioSav2 plot cioSav2]
 |-
-| 118
+| 122
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colLiv1 colLiv1]
@@ Line 1,453: / Line 1,512: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=colLiv1 plot colLiv1]
 |-
-| 119
+| 123
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colStr1 colStr1]
@@ Line 1,467: / Line 1,526: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=colStr1 plot colStr1]
 |-
-| 120
+| 124
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1]
@@ Line 1,481: / Line 1,540: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=conCri1 plot conCri1]
 |-
-| 121
+| 125
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corBra1 corBra1]
@@ Line 1,495: / Line 1,554: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=corBra1 plot corBra1]
 |-
-| 122
+| 126
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corCor1 corCor1]
@@ Line 1,509: / Line 1,568: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=corCor1 plot corCor1]
 |-
-| 123
+| 127
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cotJap1 cotJap1]
@@ Line 1,523: / Line 1,582: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cotJap1 plot cotJap1]
 |-
-| 124
+| 128
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGri1 criGri1]
@@ Line 1,537: / Line 1,596: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=criGri1 plot criGri1]
 |-
-| 125
+| 129
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGriChoV1 criGriChoV1]
@@ Line 1,551: / Line 1,610: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=criGriChoV1 plot criGriChoV1]
 |-
-| 126
+| 130
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cucCan1 cucCan1]
@@ Line 1,565: / Line 1,624: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cucCan1 plot cucCan1]
 |-
-| 127
+| 131
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cynSem1 cynSem1]
@@ Line 1,579: / Line 1,638: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cynSem1 plot cynSem1]
 |-
-| 128
+| 132
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cypVar1 cypVar1]
@@ Line 1,593: / Line 1,652: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cypVar1 plot cypVar1]
 |-
-| 129
+| 133
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10 danRer10]
@@ Line 1,607: / Line 1,666: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer10 plot danRer10]
 |-
-| 130
+| 134
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer4 danRer4]
@@ Line 1,621: / Line 1,680: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer4 plot danRer4]
 |-
-| 131
+| 135
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer5 danRer5]
@@ Line 1,635: / Line 1,694: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer5 plot danRer5]
 |-
-| 132
+| 136
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer6 danRer6]
@@ Line 1,649: / Line 1,708: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer6 plot danRer6]
 |-
-| 133
+| 137
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]
@@ Line 1,663: / Line 1,722: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer7 plot danRer7]
 |-
-| 134
+| 138
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dicLab1 dicLab1]
@@ Line 1,677: / Line 1,736: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dicLab1 plot dicLab1]
 |-
-| 135
+| 139
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1]
@@ Line 1,691: / Line 1,750: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dipOrd1 plot dipOrd1]
 |-
-| 136
+| 140
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1 dirImm1]
@@ Line 1,705: / Line 1,764: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dirImm1 plot dirImm1]
 |-
-| 137
+| 141
 | 2003
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm1 dm1]
@@ Line 1,719: / Line 1,778: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm1 plot dm1]
 |-
-| 138
+| 142
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm2 dm2]
@@ Line 1,733: / Line 1,792: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm2 plot dm2]
 |-
-| 139
+| 143
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm3 dm3]
@@ Line 1,747: / Line 1,806: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm3 plot dm3]
 |-
-| 140
+| 144
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm6 dm6]
@@ Line 1,761: / Line 1,820: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm6 plot dm6]
 |-
-| 141
+| 145
 | 2003
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp2 dp2]
@@ Line 1,775: / Line 1,834: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp2 plot dp2]
 |-
-| 142
+| 146
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp3 dp3]
@@ Line 1,789: / Line 1,848: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp3 plot dp3]
 |-
-| 143
+| 147
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp4 dp4]
@@ Line 1,803: / Line 1,862: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp4 plot dp4]
 |-
-| 144
+| 148
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAlb1 droAlb1]
@@ Line 1,817: / Line 1,876: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAlb1 plot droAlb1]
 |-
-| 145
+| 149
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna1 droAna1]
@@ Line 1,831: / Line 1,890: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna1 plot droAna1]
 |-
-| 146
+| 150
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna2 droAna2]
@@ Line 1,845: / Line 1,904: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna2 plot droAna2]
 |-
-| 147
+| 151
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3 droAna3]
@@ Line 1,859: / Line 1,918: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna3 plot droAna3]
 |-
-| 148
+| 152
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBia2 droBia2]
@@ Line 1,873: / Line 1,932: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droBia2 plot droBia2]
 |-
-| 149
+| 153
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBip2 droBip2]
@@ Line 1,887: / Line 1,946: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droBip2 plot droBip2]
 |-
-| 150
+| 154
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEle2 droEle2]
@@ Line 1,901: / Line 1,960: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEle2 plot droEle2]
 |-
-| 151
+| 155
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre1 droEre1]
@@ Line 1,915: / Line 1,974: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEre1 plot droEre1]
 |-
-| 152
+| 156
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre2 droEre2]
@@ Line 1,929: / Line 1,988: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEre2 plot droEre2]
 |-
-| 153
+| 157
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEug2 droEug2]
@@ Line 1,943: / Line 2,002: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEug2 plot droEug2]
 |-
-| 154
+| 158
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droFic2 droFic2]
@@ Line 1,957: / Line 2,016: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droFic2 plot droFic2]
 |-
-| 155
+| 159
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri1 droGri1]
@@ Line 1,971: / Line 2,030: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droGri1 plot droGri1]
 |-
-| 156
+| 160
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri2 droGri2]
@@ Line 1,985: / Line 2,044: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droGri2 plot droGri2]
 |-
-| 157
+| 161
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droKik2 droKik2]
@@ Line 1,999: / Line 2,058: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droKik2 plot droKik2]
 |-
-| 158
+| 162
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMir2 droMir2]
@@ Line 2,013: / Line 2,072: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMir2 plot droMir2]
 |-
-| 159
+| 163
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj1 droMoj1]
@@ Line 2,027: / Line 2,086: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj1 plot droMoj1]
 |-
-| 160
+| 164
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj2 droMoj2]
@@ Line 2,041: / Line 2,100: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj2 plot droMoj2]
 |-
-| 161
+| 165
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj3 droMoj3]
@@ Line 2,055: / Line 2,114: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj3 plot droMoj3]
 |-
-| 162
+| 166
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1 droPer1]
@@ Line 2,069: / Line 2,128: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droPer1 plot droPer1]
 |-
-| 163
+| 167
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPse3 droPse3]
@@ Line 2,083: / Line 2,142: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droPse3 plot droPse3]
 |-
-| 164
+| 168
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droRho2 droRho2]
@@ Line 2,097: / Line 2,156: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droRho2 plot droRho2]
 |-
-| 165
+| 169
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSec1 droSec1]
@@ Line 2,111: / Line 2,170: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSec1 plot droSec1]
 |-
-| 166
+| 170
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim1 droSim1]
@@ Line 2,125: / Line 2,184: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSim1 plot droSim1]
 |-
-| 167
+| 171
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim2 droSim2]
@@ Line 2,139: / Line 2,198: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSim2 plot droSim2]
 |-
-| 168
+| 172
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSuz1 droSuz1]
@@ Line 2,153: / Line 2,212: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSuz1 plot droSuz1]
 |-
-| 169
+| 173
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droTak2 droTak2]
@@ Line 2,167: / Line 2,226: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droTak2 plot droTak2]
 |-
-| 170
+| 174
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir1 droVir1]
@@ Line 2,181: / Line 2,240: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir1 plot droVir1]
 |-
-| 171
+| 175
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir2 droVir2]
@@ Line 2,195: / Line 2,254: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir2 plot droVir2]
 |-
-| 172
+| 176
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3 droVir3]
@@ Line 2,209: / Line 2,268: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir3 plot droVir3]
 |-
-| 173
+| 177
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil1 droWil1]
@@ Line 2,223: / Line 2,282: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droWil1 plot droWil1]
 |-
-| 174
+| 178
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil2 droWil2]
@@ Line 2,237: / Line 2,296: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droWil2 plot droWil2]
 |-
-| 175
+| 179
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak1 droYak1]
@@ Line 2,251: / Line 2,310: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak1 plot droYak1]
 |-
-| 176
+| 180
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak2 droYak2]
@@ Line 2,265: / Line 2,324: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak2 plot droYak2]
 |-
-| 177
+| 181
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak3 droYak3]
@@ Line 2,279: / Line 2,338: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak3 plot droYak3]
 |-
-| 180
+| 184
+| 2012
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000313985.1/ GCF_000313985.1]
+| ALLPATHS v. R37599
+| style='text-align:right'| 189447
+| style='text-align:right'| 35
+| style='text-align:right'| 10276263
+| &nbsp;
+| style='text-align:right'| 2860
+| style='text-align:right'| 1049531975
+| 345,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2&position=JH980443:629844-630535 JH980443:629844-630535]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=echTel2 plot echTel2]
+|-
+| 185
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=egrGar1 egrGar1]
@@ Line 2,293: / Line 2,366: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=egrGar1 plot egrGar1]
 |-
-| 181
+| 186
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eidHel1 eidHel1]
@@ Line 2,307: / Line 2,380: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eidHel1 plot eidHel1]
 |-
-| 182
+| 187
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1]
@@ Line 2,321: / Line 2,394: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eptFus1 plot eptFus1]
 |-
-| 183
+| 188
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]
@@ Line 2,335: / Line 2,408: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=equCab2 plot equCab2]
 |-
-| 184
+| 189
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equPrz1 equPrz1]
@@ Line 2,349: / Line 2,422: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=equPrz1 plot equPrz1]
 |-
-| 185
+| 190
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2]
@@ Line 2,363: / Line 2,436: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eriEur2 plot eriEur2]
 |-
-| 186
+| 191
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1 esoLuc1]
@@ Line 2,377: / Line 2,450: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=esoLuc1 plot esoLuc1]
 |-
-| 187
+| 192
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=euaGli13 euaGli13]
@@ Line 2,391: / Line 2,464: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=euaGli13 plot euaGli13]
 |-
-| 188
+| 193
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eurHel1 eurHel1]
@@ Line 2,405: / Line 2,478: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eurHel1 plot eurHel1]
 |-
-| 189
+| 194
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eutHer13 eutHer13]
@@ Line 2,419: / Line 2,492: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eutHer13 plot eutHer13]
 |-
-| 190
+| 195
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1 falChe1]
@@ Line 2,433: / Line 2,506: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=falChe1 plot falChe1]
 |-
-| 191
+| 196
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1 falPer1]
@@ Line 2,447: / Line 2,520: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=falPer1 plot falPer1]
 |-
-| 192
+| 197
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]
@@ Line 2,461: / Line 2,534: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=felCat5 plot felCat5]
 |-
-| 193
+| 198
-| 2002
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8 felCat8]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181335.2/ GCF_000181335.2]
+| CABOG v. 6.2;  MaSuRCA assembler v. 8.0; GAA v. 1.0
+| style='text-align:right'| 611459
+| style='text-align:right'| 36
+| style='text-align:right'| 31537253
+| &nbsp;
+| style='text-align:right'| 5064
+| style='text-align:right'| 4215814492
+| 482,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8&position=chrUn_AANG03063521v1:145-1109 chrUn_AANG03063521v1:145-1109]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=felCat8 plot felCat8]
+|-
+| 199
+| 2002
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr1 fr1]
 | style='text-align:center;'| tbd
@@ Line 2,475: / Line 2,562: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr1 plot fr1]
 |-
-| 194
+| 200
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr2 fr2]
@@ Line 2,489: / Line 2,576: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr2 plot fr2]
 |-
-| 195
+| 201
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]
@@ Line 2,503: / Line 2,590: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr3 plot fr3]
 |-
-| 196
+| 202
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fulGla1 fulGla1]
@@ Line 2,517: / Line 2,604: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fulGla1 plot fulGla1]
 |-
-| 197
+| 203
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]
@@ Line 2,531: / Line 2,618: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gadMor1 plot gadMor1]
 |-
-| 198
+| 204
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal2 galGal2]
@@ Line 2,545: / Line 2,632: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal2 plot galGal2]
 |-
-| 199
+| 205
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal3 galGal3]
@@ Line 2,559: / Line 2,646: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal3 plot galGal3]
 |-
-| 200
+| 206
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]
@@ Line 2,573: / Line 2,660: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal4 plot galGal4]
 |-
-| 201
+| 207
 | 2015
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal5 galGal5]
@@ Line 2,587: / Line 2,674: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal5 plot galGal5]
 |-
-| 202
+| 208
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]
@@ Line 2,601: / Line 2,688: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gasAcu1 plot gasAcu1]
 |-
-| 203
+| 209
 | 1880
 | style='text-align:center;'| gasAsc0
@@ Line 2,615: / Line 2,702: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gasAsc0 plot gasAsc0]
 |-
-| 204
+| 210
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavGan0 gavGan0]
@@ Line 2,629: / Line 2,716: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gavGan0 plot gavGan0]
 |-
-| 205
+| 211
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavSte1 gavSte1]
@@ Line 2,643: / Line 2,730: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gavSte1 plot gavSte1]
 |-
-| 206
+| 212
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1]
@@ Line 2,657: / Line 2,744: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=geoFor1 plot geoFor1]
 |-
-| 207
+| 213
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gliRes13 gliRes13]
@@ Line 2,671: / Line 2,758: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gliRes13 plot gliRes13]
 |-
-| 208
+| 214
+| 2008
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor1 gorGor1]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 2032669
+| style='text-align:right'| 34
+| style='text-align:right'| 79855216
+| &nbsp;
+| style='text-align:right'| 1003
+| style='text-align:right'| 5481108486
+| 368,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor1&position=Supercontig_0046707:4946-5682 Supercontig_0046707:4946-5682]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gorGor1 plot gorGor1]
+|-
+| 215
 | 2016
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor5 gorGor5]
@@ Line 2,685: / Line 2,786: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gorGor5 plot gorGor5]
 |-
-| 209
+| 216
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon1 haeCon1]
@@ Line 2,699: / Line 2,800: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=haeCon1 plot haeCon1]
 |-
-| 210
+| 217
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2 haeCon2]
@@ Line 2,713: / Line 2,814: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=haeCon2 plot haeCon2]
 |-
-| 211
+| 218
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halAlb1 halAlb1]
@@ Line 2,727: / Line 2,828: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=halAlb1 plot halAlb1]
 |-
-| 212
+| 219
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halLeu1 halLeu1]
@@ Line 2,741: / Line 2,842: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=halLeu1 plot halLeu1]
 |-
-| 213
+| 220
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1 hapBur1]
@@ Line 2,755: / Line 2,856: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hapBur1 plot hapBur1]
 |-
-| 214
+| 221
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1 hetBac1]
@@ Line 2,769: / Line 2,870: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hetBac1 plot hetBac1]
 |-
-| 215
+| 222
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]
@@ Line 2,783: / Line 2,884: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hetGla2 plot hetGla2]
 |-
-| 216
+| 223
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=homIni14 homIni14]
@@ Line 2,797: / Line 2,898: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=homIni14 plot homIni14]
 |-
-| 217
+| 224
 | 1880
 | style='text-align:center;'| homNea0
@@ Line 2,811: / Line 2,912: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=homNea0 plot homNea0]
 |-
-| 219
+| 226
+| 2012
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000280705.1/ GCF_000280705.1]
+| ALLPATHS v. R41689 HAPLOIDIFY=True
+| style='text-align:right'| 430190
+| style='text-align:right'| 34
+| style='text-align:right'| 18722704
+| &nbsp;
+| style='text-align:right'| 6295
+| style='text-align:right'| 3230508925
+| 276,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1&position=JH725590:3244288-3244840 JH725590:3244288-3244840]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=jacJac1 plot jacJac1]
+|-
+| 227
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lauRas13 lauRas13]
@@ Line 2,825: / Line 2,940: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lauRas13 plot lauRas13]
 |-
-| 220
+| 228
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepDis1 lepDis1]
@@ Line 2,839: / Line 2,954: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lepDis1 plot lepDis1]
 |-
-| 221
+| 229
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1 lepOcu1]
@@ Line 2,853: / Line 2,968: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lepOcu1 plot lepOcu1]
 |-
-| 222
+| 230
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=letCam1 letCam1]
@@ Line 2,867: / Line 2,982: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=letCam1 plot letCam1]
 |-
-| 223
+| 231
 | 1880
 | style='text-align:center;'| linHum0
@@ Line 2,881: / Line 2,996: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=linHum0 plot linHum0]
 |-
-| 224
+| 232
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lipVex1 lipVex1]
@@ Line 2,895: / Line 3,010: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lipVex1 plot lipVex1]
 |-
-| 225
+| 233
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1 loaLoa1]
@@ Line 2,909: / Line 3,024: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=loaLoa1 plot loaLoa1]
 |-
-| 226
+| 234
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manPen1 manPen1]
@@ Line 2,923: / Line 3,038: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=manPen1 plot manPen1]
 |-
-| 227
+| 235
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manVit1 manVit1]
@@ Line 2,937: / Line 3,052: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=manVit1 plot manVit1]
 |-
-| 229
+| 237
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1 mayZeb1]
@@ Line 2,951: / Line 3,066: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mayZeb1 plot mayZeb1]
 |-
-| 230
+| 238
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=megLyr1 megLyr1]
@@ Line 2,965: / Line 3,080: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=megLyr1 plot megLyr1]
 |-
-| 231
+| 239
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]
@@ Line 2,979: / Line 3,094: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melGal1 plot melGal1]
 |-
-| 232
+| 240
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal5 melGal5]
@@ Line 2,993: / Line 3,108: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melGal5 plot melGal5]
 |-
-| 233
+| 241
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1 melHap1]
@@ Line 3,007: / Line 3,122: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melHap1 plot melHap1]
 |-
-| 234
+| 242
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc1 melInc1]
@@ Line 3,021: / Line 3,136: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melInc1 plot melInc1]
 |-
-| 235
+| 243
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2 melInc2]
@@ Line 3,035: / Line 3,150: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melInc2 plot melInc2]
 |-
-| 236
+| 244
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]
@@ Line 3,049: / Line 3,164: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melUnd1 plot melUnd1]
 |-
-| 237
+| 245
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=merNub1 merNub1]
@@ Line 3,063: / Line 3,178: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=merNub1 plot merNub1]
 |-
-| 238
+| 246
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1]
@@ Line 3,077: / Line 3,192: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mesAur1 plot mesAur1]
 |-
-| 239
+| 247
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesUni1 mesUni1]
@@ Line 3,091: / Line 3,206: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mesUni1 plot mesUni1]
 |-
-| 240
+| 248
+| 2007
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000165445.1/ GCA_000165445.1]
+| tbd
+| style='text-align:right'| 318135
+| style='text-align:right'| 36
+| style='text-align:right'| 16408745
+| &nbsp;
+| style='text-align:right'| 3194
+| style='text-align:right'| 1669326577
+| 302,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1&position=scaffold_11535:27481-28085 scaffold_11535:27481-28085]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micMur1 plot micMur1]
+|-
+| 249
 | 2015
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur2 micMur2]
@@ Line 3,105: / Line 3,234: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micMur2 plot micMur2]
 |-
-| 241
+| 250
 | 2017
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur3 micMur3]
@@ Line 3,119: / Line 3,248: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micMur3 plot micMur3]
 |-
-| 242
+| 251
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micOch1 micOch1]
@@ Line 3,133: / Line 3,262: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micOch1 plot micOch1]
 |-
-| 243
+| 252
+| 2005
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm7 mm7]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 796902
+| style='text-align:right'| 35
+| style='text-align:right'| 37088826
+| &nbsp;
+| style='text-align:right'| 6053
+| style='text-align:right'| 5781640680
+| 499,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm7&position=chr11:108519568-108520566 chr11:108519568-108520566]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm7 plot mm7]
+|-
+| 253
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm8 mm8]
@@ Line 3,147: / Line 3,290: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm8 plot mm8]
 |-
-| 244
+| 254
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm9 mm9]
@@ Line 3,161: / Line 3,304: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm9 plot mm9]
 |-
-| 245
+| 255
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2 musDom2]
@@ Line 3,175: / Line 3,318: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=musDom2 plot musDom2]
 |-
-| 246
+| 256
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1]
@@ Line 3,189: / Line 3,332: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=musFur1 plot musFur1]
 |-
-| 247
+| 257
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoBra1 myoBra1]
@@ Line 3,203: / Line 3,346: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoBra1 plot myoBra1]
 |-
-| 248
+| 258
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1 myoDav1]
@@ Line 3,217: / Line 3,360: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoDav1 plot myoDav1]
 |-
-| 249
+| 259
+| 2006
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc1 myoLuc1]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 252160
+| style='text-align:right'| 38
+| style='text-align:right'| 14746446
+| &nbsp;
+| style='text-align:right'| 2605
+| style='text-align:right'| 1175238045
+| 253,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc1&position=scaffold_116983:3336-3842 scaffold_116983:3336-3842]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoLuc1 plot myoLuc1]
+|-
+| 260
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]
@@ Line 3,231: / Line 3,388: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoLuc2 plot myoLuc2]
 |-
-| 250
+| 261
 | 2015
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanPar1 nanPar1]
@@ Line 3,245: / Line 3,402: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nanPar1 plot nanPar1]
 |-
-| 251
+| 262
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1 necAme1]
@@ Line 3,259: / Line 3,416: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=necAme1 plot necAme1]
 |-
-| 252
+| 263
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nemVec1 nemVec1]
@@ Line 3,273: / Line 3,430: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nemVec1 plot nemVec1]
 |-
-| 253
+| 264
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1 neoBri1]
@@ Line 3,287: / Line 3,444: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=neoBri1 plot neoBri1]
 |-
-| 254
+| 265
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nipNip1 nipNip1]
@@ Line 3,301: / Line 3,458: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nipNip1 plot nipNip1]
 |-
-| 255
+| 266
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=notCor1 notCor1]
@@ Line 3,315: / Line 3,472: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=notCor1 plot notCor1]
 |-
-| 256
+| 267
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3]
@@ Line 3,329: / Line 3,486: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ochPri3 plot ochPri3]
 |-
-| 257
+| 268
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1]
@@ Line 3,343: / Line 3,500: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=odoRosDiv1 plot odoRosDiv1]
 |-
-| 258
+| 269
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1 oncVol1]
@@ Line 3,357: / Line 3,514: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oncVol1 plot oncVol1]
 |-
-| 259
+| 270
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=opiHoa1 opiHoa1]
@@ Line 3,371: / Line 3,528: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=opiHoa1 plot opiHoa1]
 |-
-| 260
+| 271
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1 orcOrc1]
@@ Line 3,385: / Line 3,542: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=orcOrc1 plot orcOrc1]
 |-
-| 261
+| 272
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]
@@ Line 3,399: / Line 3,556: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oreNil1 plot oreNil1]
 |-
-| 262
+| 273
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]
@@ Line 3,413: / Line 3,570: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ornAna1 plot ornAna1]
 |-
-| 263
+| 274
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna2 ornAna2]
@@ Line 3,427: / Line 3,584: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ornAna2 plot ornAna2]
 |-
-| 264
+| 275
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]
@@ Line 3,441: / Line 3,598: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryCun2 plot oryCun2]
 |-
-| 265
+| 276
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat1 oryLat1]
@@ Line 3,455: / Line 3,612: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryLat1 plot oryLat1]
 |-
-| 266
+| 277
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]
@@ Line 3,469: / Line 3,626: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryLat2 plot oryLat2]
 |-
-| 267
+| 278
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]
@@ Line 3,483: / Line 3,640: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=otoGar3 plot otoGar3]
 |-
-| 268
+| 279
+| 2010
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000005525.1/ GCA_000005525.1]
+| tbd
+| style='text-align:right'| 14042
+| style='text-align:right'| 49
+| style='text-align:right'| 1013366
+| &nbsp;
+| style='text-align:right'| 214
+| style='text-align:right'| 36573585
+| 264,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1&position=chr15:8985870-8986398 chr15:8985870-8986398]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oviAri1 plot oviAri1]
+|-
+| 280
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3]
@@ Line 3,497: / Line 3,668: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oviAri3 plot oviAri3]
 |-
-| 269
+| 281
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panHod1 panHod1]
@@ Line 3,511: / Line 3,682: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panHod1 plot panHod1]
 |-
-| 270
+| 282
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1 panRed1]
@@ Line 3,525: / Line 3,696: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panRed1 plot panRed1]
 |-
-| 271
+| 283
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTig1 panTig1]
@@ Line 3,539: / Line 3,710: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTig1 plot panTig1]
 |-
-| 272
+| 284
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelCri1 pelCri1]
@@ Line 3,553: / Line 3,724: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pelCri1 plot pelCri1]
 |-
-| 273
+| 285
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelSin1 pelSin1]
@@ Line 3,567: / Line 3,738: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pelSin1 plot pelSin1]
 |-
-| 274
+| 286
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=perManBai1 perManBai1]
@@ Line 3,581: / Line 3,752: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=perManBai1 plot perManBai1]
 |-
-| 275
+| 287
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1]
@@ Line 3,595: / Line 3,766: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=petMar1 plot petMar1]
 |-
-| 276
+| 288
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2 petMar2]
@@ Line 3,609: / Line 3,780: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=petMar2 plot petMar2]
 |-
-| 277
+| 289
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaCar1 phaCar1]
@@ Line 3,623: / Line 3,794: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phaCar1 plot phaCar1]
 |-
-| 278
+| 290
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaLep1 phaLep1]
@@ Line 3,637: / Line 3,808: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phaLep1 plot phaLep1]
 |-
-| 279
+| 291
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phoRub1 phoRub1]
@@ Line 3,651: / Line 3,822: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phoRub1 plot phoRub1]
 |-
-| 280
+| 292
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phyCat1 phyCat1]
@@ Line 3,665: / Line 3,836: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phyCat1 plot phyCat1]
 |-
-| 281
+| 293
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=picPub1 picPub1]
@@ Line 3,679: / Line 3,850: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=picPub1 plot picPub1]
 |-
-| 282
+| 294
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeFor1 poeFor1]
@@ Line 3,693: / Line 3,864: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=poeFor1 plot poeFor1]
 |-
-| 283
+| 295
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeRet1 poeRet1]
@@ Line 3,707: / Line 3,878: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=poeRet1 plot poeRet1]
 |-
-| 284
+| 296
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1 priExs1]
@@ Line 3,721: / Line 3,892: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priExs1 plot priExs1]
 |-
-| 285
+| 297
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac1 priPac1]
@@ Line 3,735: / Line 3,906: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac1 plot priPac1]
 |-
-| 286
+| 298
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac2 priPac2]
@@ Line 3,749: / Line 3,920: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac2 plot priPac2]
 |-
-| 287
+| 299
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3 priPac3]
@@ Line 3,763: / Line 3,934: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac3 plot priPac3]
 |-
-| 288
+| 300
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1 pseHum1]
@@ Line 3,777: / Line 3,948: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pseHum1 plot pseHum1]
 |-
-| 289
+| 301
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1 pteAle1]
@@ Line 3,791: / Line 3,962: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pteAle1 plot pteAle1]
 |-
-| 290
+| 302
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteGut1 pteGut1]
@@ Line 3,805: / Line 3,976: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pteGut1 plot pteGut1]
 |-
-| 291
+| 303
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ptePar1 ptePar1]
@@ Line 3,819: / Line 3,990: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ptePar1 plot ptePar1]
 |-
-| 292
+| 304
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]
@@ Line 3,833: / Line 4,004: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pteVam1 plot pteVam1]
 |-
-| 293
+| 305
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1 punNye1]
@@ Line 3,847: / Line 4,018: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=punNye1 plot punNye1]
 |-
-| 294
+| 306
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pygAde1 pygAde1]
@@ Line 3,861: / Line 4,032: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pygAde1 plot pygAde1]
 |-
-| 295
+| 307
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pytBiv1 pytBiv1]
@@ Line 3,875: / Line 4,046: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pytBiv1 plot pytBiv1]
 |-
-| 296
+| 308
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase0 repBase0]
@@ Line 3,889: / Line 4,060: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase0 plot repBase0]
 |-
-| 297
+| 309
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase1 repBase1]
@@ Line 3,903: / Line 4,074: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase1 plot repBase1]
 |-
-| 298
+| 310
 | 1880
 | style='text-align:center;'| repBase2
@@ Line 3,917: / Line 4,088: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase2 plot repBase2]
 |-
-| 300
+| 312
+| 2005
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac1 rheMac1]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 674143
+| style='text-align:right'| 34
+| style='text-align:right'| 28294758
+| &nbsp;
+| style='text-align:right'| 3903
+| style='text-align:right'| 4022554742
+| 166,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac1&position=SCAFFOLD105044:90895-91227 SCAFFOLD105044:90895-91227]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rheMac1 plot rheMac1]
+|-
+| 313
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiFer1 rhiFer1]
@@ Line 3,931: / Line 4,116: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rhiFer1 plot rhiFer1]
 |-
-| 301
+| 314
 | 1880
 | style='text-align:center;'| ricCom1
@@ Line 3,945: / Line 4,130: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ricCom1 plot ricCom1]
 |-
-| 302
+| 315
 | 2003
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn3 rn3]
@@ Line 3,959: / Line 4,144: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rn3 plot rn3]
 |-
-| 303
+| 316
-| 2016
+| 2004
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rouAeg1 rouAeg1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn4 rn4]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001466805.2/ GCF_001466805.2]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 1201940
+| style='text-align:right'| 39
+| style='text-align:right'| 66433547
+| &nbsp;
+| style='text-align:right'| 5409
+| style='text-align:right'| 8492561356
+| 230,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn4&position=chr1:37914850-37915310 chr1:37914850-37915310]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rn4 plot rn4]
+|-
+| 317
+| 2016
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rouAeg1 rouAeg1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001466805.2/ GCF_001466805.2]
 | SparseAssembler v. OCTOBER-2015; DBG2OLC v. OCTOBER-2015; LINKS v. 1.5.1; L_RNA_Scaffolder v. OCTOBER-2015; SSPACE v. 3.0
 | style='text-align:right'| 74090
@@ Line 3,973: / Line 4,172: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rouAeg1 plot rouAeg1]
 |-
-| 304
+| 318
 | 2003
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer1 sacCer1]
@@ Line 3,987: / Line 4,186: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer1 plot sacCer1]
 |-
-| 305
+| 319
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer2 sacCer2]
@@ Line 4,001: / Line 4,200: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer2 plot sacCer2]
 |-
-| 306
+| 320
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3 sacCer3]
@@ Line 4,015: / Line 4,214: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer3 plot sacCer3]
 |-
-| 307
+| 321
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]
@@ Line 4,029: / Line 4,228: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=saiBol1 plot saiBol1]
 |-
-| 308
+| 322
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebNig1 sebNig1]
@@ Line 4,043: / Line 4,242: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sebNig1 plot sebNig1]
 |-
-| 309
+| 323
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebRub1 sebRub1]
@@ Line 4,057: / Line 4,256: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sebRub1 plot sebRub1]
 |-
-| 310
+| 324
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=serCan1 serCan1]
@@ Line 4,071: / Line 4,270: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=serCan1 plot serCan1]
 |-
-| 311
+| 325
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2]
@@ Line 4,085: / Line 4,284: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sorAra2 plot sorAra2]
 |-
-| 312
+| 326
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]
@@ Line 4,099: / Line 4,298: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=speTri2 plot speTri2]
 |-
-| 313
+| 327
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=stePar1 stePar1]
@@ Line 4,113: / Line 4,312: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=stePar1 plot stePar1]
 |-
-| 314
+| 328
 | 1880
 | style='text-align:center;'| strCam0
@@ Line 4,127: / Line 4,326: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strCam0 plot strCam0]
 |-
-| 315
+| 329
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam1 strCam1]
@@ Line 4,141: / Line 4,340: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strCam1 plot strCam1]
 |-
-| 316
+| 330
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur1 strPur1]
@@ Line 4,155: / Line 4,354: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur1 plot strPur1]
 |-
-| 317
+| 331
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur2 strPur2]
@@ Line 4,169: / Line 4,368: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur2 plot strPur2]
 |-
-| 318
+| 332
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur3 strPur3]
@@ Line 4,183: / Line 4,382: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur3 plot strPur3]
 |-
-| 319
+| 333
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4 strPur4]
@@ Line 4,197: / Line 4,396: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur4 plot strPur4]
 |-
-| 320
+| 334
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat1 strRat1]
@@ Line 4,211: / Line 4,410: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strRat1 plot strRat1]
 |-
-| 321
+| 335
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2 strRat2]
@@ Line 4,225: / Line 4,424: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strRat2 plot strRat2]
 |-
-| 323
+| 337
 | 1880
 | style='text-align:center;'| taeGut0
@@ Line 4,239: / Line 4,438: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut0 plot taeGut0]
 |-
-| 324
+| 338
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]
@@ Line 4,253: / Line 4,452: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut1 plot taeGut1]
 |-
-| 325
+| 339
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2]
@@ Line 4,267: / Line 4,466: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut2 plot taeGut2]
 |-
-| 327
+| 341
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1 takFla1]
@@ Line 4,281: / Line 4,480: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=takFla1 plot takFla1]
 |-
-| 328
+| 342
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tauEry1 tauEry1]
@@ Line 4,295: / Line 4,494: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tauEry1 plot tauEry1]
 |-
-| 329
+| 343
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig1 tetNig1]
@@ Line 4,309: / Line 4,508: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tetNig1 plot tetNig1]
 |-
-| 330
+| 344
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]
@@ Line 4,323: / Line 4,522: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tetNig2 plot tetNig2]
 |-
-| 331
+| 345
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut1 tinGut1]
@@ Line 4,337: / Line 4,536: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tinGut1 plot tinGut1]
 |-
-| 332
+| 346
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut2 tinGut2]
@@ Line 4,351: / Line 4,550: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tinGut2 plot tinGut2]
 |-
-| 333
+| 347
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas1 triCas1]
@@ Line 4,365: / Line 4,564: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triCas1 plot triCas1]
 |-
-| 334
+| 348
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas2 triCas2]
@@ Line 4,379: / Line 4,578: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triCas2 plot triCas2]
 |-
-| 335
+| 349
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSpi1 triSpi1]
@@ Line 4,393: / Line 4,592: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triSpi1 plot triSpi1]
 |-
-| 336
+| 350
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSui1 triSui1]
@@ Line 4,407: / Line 4,606: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triSui1 plot triSui1]
 |-
-| 337
+| 351
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru1 turTru1]
@@ Line 4,421: / Line 4,620: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=turTru1 plot turTru1]
 |-
-| 338
+| 352
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]
@@ Line 4,435: / Line 4,634: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=turTru2 plot turTru2]
 |-
-| 339
+| 353
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tytAlb1 tytAlb1]
@@ Line 4,449: / Line 4,648: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tytAlb1 plot tytAlb1]
 |-
-| 340
+| 354
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ursMar1 ursMar1]
@@ Line 4,463: / Line 4,662: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ursMar1 plot ursMar1]
 |-
-| 341
+| 355
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=venter1 venter1]
@@ Line 4,477: / Line 4,676: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=venter1 plot venter1]
 |-
-| 342
+| 356
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2]
@@ Line 4,491: / Line 4,690: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=vicPac2 plot vicPac2]
 |-
-| 343
+| 357
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro1 xenTro1]
@@ Line 4,505: / Line 4,704: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro1 plot xenTro1]
 |-
-| 344
+| 358
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro2 xenTro2]
@@ Line 4,519: / Line 4,718: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro2 plot xenTro2]
 |-
-| 345
+| 359
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]
@@ Line 4,533: / Line 4,732: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro3 plot xenTro3]
 |-
-| 346
+| 360
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7]
@@ Line 4,547: / Line 4,746: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro7 plot xenTro7]
 |-
-| 347
+| 361
 | 2016
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro9 xenTro9]
@@ Line 4,561: / Line 4,760: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro9 plot xenTro9]
 |-
-| 348
+| 362
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xipMac1 xipMac1]
@@ Line 4,575: / Line 4,774: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xipMac1 plot xipMac1]
 |-
-| 350
+| 364
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=zonAlb1 zonAlb1]
@@ Line 4,596: / Line 4,795: @@
 ! style='text-align:center;'| dbName
 ! style='text-align:center;'| ncbiAsmId
-! style='text-align:center;'| number of gaps
+! style='text-align:center;'| assembly size
 ! style='text-align:center;'| assembly method
+|-
+| 001
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bunEbo1 bunEbo1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000889155.1/ GCF_000889155.1]
+| style='text-align:right;'| 18940
+| style='text-align:center;'| tbd
+|-
+| 002
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eboVir1 eboVir1]
+| style='text-align:center;'| tbd
+| style='text-align:right;'| 870153
+| style='text-align:center;'| tbd
+|-
+| 003
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eboVir3 eboVir3]
+| style='text-align:center;'| tbd
+| style='text-align:right;'| 18957
+| style='text-align:center;'| tbd
+|-
+| 004
+| 2002
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hpv1 hpv1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000862685.1/ GCF_000862685.1]
+| style='text-align:right;'| 8033
+| style='text-align:center;'| tbd
+|-
+| 005
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=marVir1 marVir1]
+| style='text-align:center;'| tbd
+| style='text-align:right;'| 38225
+| style='text-align:center;'| tbd
+|-
+| 006
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=resEbo1 resEbo1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000854085.1/ GCF_000854085.1]
+| style='text-align:right;'| 18891
+| style='text-align:center;'| tbd
+|-
+| 007
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sudEbo1 sudEbo1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000855585.1/ GCF_000855585.1]
+| style='text-align:right;'| 18875
+| style='text-align:center;'| tbd
+|-
+| 008
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taiEbo1 taiEbo1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000888475.1/ GCF_000888475.1]
+| style='text-align:right;'| 18935
+| style='text-align:center;'| tbd
+|-
+| 009
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=zaiEbo1 zaiEbo1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000848505.1/ GCF_000848505.1]
+| style='text-align:right;'| 18959
+| style='text-align:center;'| tbd
 |}