GI2012TrackHubsPoster: Difference between revisions

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This page contains links related to the UCSC Genome Browser poster presented by [[User:AngieHinrichs|Angie]] at Biology of Genomes 2012 [http://meetings.cshl.edu/meetings/genome12.shtml])
This page contains links related to the UCSC Genome Browser poster presented by [[User:brianraney|Brian Raney]] at Genome Informatics 2012 [https://registration.hinxton.wellcome.ac.uk/display_info.asp?id=296])


=Poster: Using the UCSC Genome Browser to evaluate putative genetic variants=
=Poster: Remote Data Track Storage for Viewing on the UCSC Genome Browser =


* Files: [[Media:Hinrichs_BoG2012_GBVariants.pptx|.pptx]], [[Media:Hinrichs_BoG2012_GBVariants.pdf|PDF]]
* Files: [[Media:Hinrichs_BoG2012_GBVariants.pptx|.pptx]], [[Media:Hinrichs_BoG2012_GBVariants.pdf|PDF]]


==View poster screenshots in the Genome Browser==
* [http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=AngieHinrichs&hgS_otherUserSessionName=BoG.2012.commonOmimAV Is there an associated phenotype?]
* [http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=AngieHinrichs&hgS_otherUserSessionName=BoG.2012.PramefCommonDel How rare is this deletion?]
* [http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=AngieHinrichs&hgS_otherUserSessionName=BoG.2012.fictionalVarPseudogeneRegPeak Novel variant: what's in the neighborhood?]
* [http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=AngieHinrichs&hgS_otherUserSessionName=BoG.2012.funWith1kG Decoding the VCF w/phased genotypes display]
* [http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=AngieHinrichs&hgS_otherUserSessionName=BoG.2012.dbSNPbabyBathwater dbSNP: Not just polymorphisms]
==1000 Genomes Phase 1 v3 integrated variants (May 2012) used in the poster==
Thanks to the [http://www.1000genomes.org/ 1000 Genomes Project] for making these data available:
[ftp://ftp.ncbi.nih.gov/1000genomes/ftp/release/20110521/ ftp://ftp.ncbi.nih.gov/1000genomes/ftp/release/20110521/]
To view a chromosome's phased genotype calls in the browser, right-click to copy the corresponding link ending in ".genotypes.vcf.gz" and then use that as the bigDataUrl parameter as described here: [http://genome.ucsc.edu/goldenPath/help/vcf.html http://genome.ucsc.edu/goldenPath/help/vcf.html]


==How to get help==
==How to get help==

Revision as of 20:09, 27 August 2012

This page contains links related to the UCSC Genome Browser poster presented by Brian Raney at Genome Informatics 2012 [1])

Poster: Remote Data Track Storage for Viewing on the UCSC Genome Browser


How to get help

Other posters about the UCSC Genome Browser

  • Visually integrating genomic data in the UCSC Genome Browser. Hinrichs AS et al. HGV 2011 genomewiki page .pptx, PDF
  • UCSC Genome Browser Data Hubs. Zweig AS et al. Biology of Genomes, 2011 PDF
  • Genome-wide ENCODE Data at UCSC. Rosenbloom KR et al. ASHG, 2010. PPT
  • UCSC Genome Browser Tool Suite. Hinrichs AS et al. Genomics of Common Disease, 2008: .ppt, PDF
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