GalGal6 77-way conservation alignment
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see also
- Chicken 77-way GalGal6 77-way Genome size statistics
- Chicken 77-way GalGal6 77-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on galGal6 |
% of galGal6 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | galGal6 | Gallus gallus | Chicken | Mar. 2018 (GRCg6a/galGal6) | Genome Reference Consortium | 2018-10-11 | 2018-10-11 | N/A | N/A |
| 02 | melGal5 | Meleagris gallopavo | Turkey | Nov. 2014 (Turkey_5.0/melGal5) | Turkey Genome Consortium | 2017-01-12 | 2017-01-13 | 2018-10-17 | 94.495% |
| 03 | cotJap2 | Coturnix japonica | Japanese quail | Mar. 2016 (Coturnix japonica 2.0/cotJap2) | McDonnell Genome Institute - Washington University School of Medicine | 2018-10-24 | 2018-10-25 | 2018-10-26 | 90.071% |
| 04 | aquChr2 | Aquila chrysaetos canadensis | Golden eagle | Oct. 2014 (aquChr-1.0.2/aquChr2) | WashU | 2015-03-05 | 2015-03-06 | 2018-10-17 | 87.687% |
| 05 | halLeu1 | Haliaeetus leucocephalus | Bald eagle | Aug 2014 (Haliaeetus_leucocephalus-4.0/halLeu1) | The Bald Eagle Consortium GCA_000737465.1 | 2014-08-14 | 2014-08-15 | 2018-10-20 | 86.923% |
| 06 | nipNip1 | Nipponia nippon | Crested ibis | Jun 2014 (ASM70822v1/nipNip1) | College of Medicine and Forensics, Xi'an Jiaotong University GCA_000708225.1 | 2014-07-01 | 2014-07-02 | 2018-10-20 | 86.903% |
| 07 | aptFor1 | Aptenodytes forsteri | Emperor penguin | 06 Jun 2014 (ASM69914v1/aptFor1) | BGI GCA_000699145.1 | 2014-06-26 | 2014-06-30 | 2018-10-17 | 86.834% |
| 08 | falPer1 | Falco peregrinus | Peregrine falcon | Feb 2013 (F_peregrinus_v1.0/falPer1) | BGI GCA_000337955.1 | 2013-06-28 | 2013-06-28 | 2018-10-19 | 86.500% |
| 09 | falChe1 | Falco cherrug | Saker falcon | Feb 2013 (F_cherrug_v1.0/falChe1) | BGI GCA_000337975.1 | 2013-06-27 | 2013-06-27 | 2018-10-19 | 86.342% |
| 10 | chaVoc2 | Charadrius vociferus | Killdeer | Aug 2014 (ASM70802v2/chaVoc2) | BGI GCA_000708025.2 | 2014-08-14 | 2014-08-15 | 2018-10-18 | 86.267% |
| 11 | pygAde1 | Pygoscelis adeliae | Adelie penguin | Jun 2014 (ASM69910v1/pygAde1) | BGI GCA_000699105.1 | 2014-07-02 | 2014-07-02 | 2018-10-21 | 85.892% |
| 12 | egrGar1 | Egretta garzetta | Little egret | May 2014 (ASM68718v1/egrGar1) | College of Medicine and Forensics, Xi'an Jiaotong University GCA_000687185.1 | 2014-06-28 | 2014-07-01 | 2018-10-19 | 85.589% |
| 13 | anaPla1 | Anas platyrhynchos | Mallard duck | Apr 2013 (BGI_duck_1.0/anaPla1) | State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing GCA_000355885.1 | 2013-06-27 | 2013-06-27 | 2018-10-17 | 85.509% |
| 14 | pelCri1 | Pelecanus crispus | Dalmatian pelican | May 2014 (ASM68737v1/pelCri1) | BGI GCA_000687375.1 | 2014-07-01 | 2014-07-02 | 2018-10-20 | 85.344% |
| 15 | fulGla1 | Fulmarus glacialis | Northern fulmar | May 2014 (ASM69083v1/fulGla1) | BGI GCA_000690835.1 | 2014-06-29 | 2014-07-01 | 2018-10-19 | 85.332% |
| 16 | carCri1 | Cariama cristata | Red-legged seriema | May 2014 (ASM69053v1/carCri1) | BGI GCA_000690535.1 | 2014-06-27 | 2014-07-01 | 2018-10-18 | 85.094% |
| 17 | lepDis1 | Leptosomus discolor | Cuckoo roller | May 2014 (ASM69178v1/lepDis1) | BGI GCA_000691785.1 | 2014-06-30 | 2014-07-01 | 2018-10-20 | 85.021% |
| 18 | halAlb1 | Haliaeetus albicilla | White-tailed eagle | May 2014 (ASM69140v1/halAlb1) | BGI GCA_000691405.1 | 2014-06-29 | 2014-07-01 | 2018-10-20 | 84.997% |
| 19 | phoRub1 | Phoenicopterus ruber ruber | American flamingo | May 2014 (ASM68726v1/phoRub1) | BGI GCA_000687265.1 | 2014-07-02 | 2014-07-02 | 2018-10-21 | 84.793% |
| 20 | gavSte1 | Gavia stellata | Red-throated loon | May 2014 (ASM69087v1/gavSte1) | BGI GCA_000690875.1 | 2014-06-29 | 2014-07-01 | 2018-10-19 | 84.717% |
| 21 | balPav1 | Balearica pavonina gibbericeps | Crowned crain | Jun 2014 (ASM70989v1/balPav1) | BGI GCA_000709895.1 | 2014-06-27 | 2014-06-30 | 2018-10-18 | 84.687% |
| 22 | opiHoa1 | Opisthocomus hoazin | Hoatzin | May 2014 (ASM69207v1/opiHoa1) | BGI GCA_000692075.1 | 2014-07-01 | 2014-07-02 | 2018-10-20 | 84.579% |
| 23 | phaLep1 | Phaethon lepturus | White-tailed tropicbird | May 2014 (ASM68728v1/phaLep1) | BGI GCA_000687285.1 | 2014-07-01 | 2014-07-02 | 2018-10-20 | 84.519% |
| 24 | tauEry1 | Tauraco erythrolophus | Red crested turaco | Jun 2014 (ASM70936v1/tauEry1) | BGI GCA_000709365.1 | 2014-07-02 | 2014-07-02 | 2018-10-21 | 84.485% |
| 25 | phaCar1 | Phalacrocorax carbo | Great cormorant | Jun 2014 (ASM70892v1/phaCar1) | BGI GCA_000708925.1 | 2014-07-02 | 2014-07-02 | 2018-10-20 | 84.182% |
| 26 | tytAlb1 | Tyto alba | Barn owl | May 2014 (ASM68720v1/tytAlb1) | BGI GCA_000687205.1 | 2014-07-02 | 2014-07-02 | 2018-10-21 | 84.122% |
| 27 | capCar1 | Caprimulgus carolinensis | Chuck-will's-widow | Jun 2014 (ASM70074v1/capCar1) | BGI GCA_000700745.1 | 2014-06-27 | 2014-06-30 | 2018-10-18 | 83.573% |
| 28 | cucCan1 | Cuculus canorus | Common cuckoo | Jun 2014 (ASM70932v1/cucCan1) | BGI GCA_000709325.1 | 2014-06-28 | 2014-07-01 | 2018-10-19 | 83.150% |
| 29 | colLiv1 | Columba livia | Rock pigeon | Feb 2013 (Cliv_1.0/colLiv1) | BGI GCA_000337935.1 | 2013-06-27 | 2013-06-27 | 2018-10-18 | 83.073% |
| 30 | chlUnd1 | Chlamydotis undulata macqueenii | Houbara bustard | Jun 2014 (ASM69519v1/chlUnd1) | BGI GCA_000695195.1 | 2014-06-28 | 2014-07-01 | 2018-10-18 | 83.041% |
| 31 | mesUni1 | Mesitornis unicolor | Brown roatelo | Jun 2014 (ASM69576v1/mesUni1) | BGI GCA_000695765.1 | 2014-06-30 | 2014-07-01 | 2018-10-20 | 82.649% |
| 32 | pteGut1 | Pterocles gutturalis | Yellow-throated sandgrouse | Jun 2014 (ASM69924v1/pteGut1) | BGI GCA_000699245.1 | 2014-07-02 | 2014-07-02 | 2018-10-21 | 82.523% |
| 33 | eurHel1 | Eurypyga helias | Sunbittern | May 2014 (ASM69077v1/eurHel1) | BGI GCA_000690775.1 | 2014-06-29 | 2014-07-01 | 2018-10-19 | 82.426% |
| 34 | strCam1 | Struthio camelus australis | Ostrich | 06 Jun-2014 (ASM69896v1/strCam1) | BGI GCA_000698965.1 | 2014-06-12 | 2014-06-12 | 2018-10-21 | 82.389% |
| 35 | melUnd1 | Melopsittacus undulatus | Budgerigar | Sep. 2011 (WUSTL v6.3/melUnd1) | WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) | 2012-03-27 | 2012-03-28 | 2018-10-20 | 81.694% |
| 36 | merNub1 | Merops nubicus | Northern carmine bee-eater | May 2014 (ASM69184v1/merNub1) | BGI GCA_000691845.1 | 2014-06-30 | 2014-07-01 | 2018-10-20 | 81.018% |
| 37 | apaVit1 | Apaloderma vittatum | Bar tailed trogon | 16 Jun 2014 (ASM70340v1/apaVit1) | BGI GCA_000703405.1 | 2014-06-26 | 2014-06-30 | 2018-10-17 | 81.010% |
| 38 | colStr1 | Colius striatus | Speckled mousebird | May 2014 (ASM69071v1/colStr1) | BGI GCA_000690715.1 | 2014-06-28 | 2014-07-01 | 2018-10-18 | 80.987% |
| 39 | corBra1 | Corvus brachyrhynchos | American crow | Jun 2014 (ASM69197v1/corBra1) | BGI GCA_000691975.1 | 2014-06-28 | 2014-07-01 | 2018-10-19 | 80.978% |
| 40 | bucRhi1 | Buceros rhinoceros silvestris | Rhinoceros hornbill | Jun 2014 (ASM71030v1/bucRhi1) | BGI GCA_000710305.1 | 2014-08-14 | 2014-08-15 | 2018-10-18 | 80.812% |
| 41 | pseHum1 | Pseudopodoces humilis | Tibetan ground jay | Jan 2013 (PseHum1.0/pseHum1) | Beijing Genomics Institute (BGI)-Shenzhen GCA_000331425.1 | 2013-06-27 | 2013-06-27 | 2018-10-21 | 80.622% |
| 42 | amaVit1 | Amazona vittata | Parrot | Jan. 2013 (AV1/amaVit1) | Puerto Rican Parrot Genome Project AV1 | 2013-03-27 | 2013-03-27 | 2018-10-17 | 80.577% |
| 43 | corCor1 | Corvus cornix cornix | Hooded crow | Aug 2014 (Hooded_Crow_genome/corCor1) | Uppsala University GCA_000738735.1 | 2014-08-14 | 2014-08-15 | 2018-10-19 | 80.574% |
| 44 | serCan1 | Serinus canaria | Canary | 15 Jan-2014 (SCA1/serCan1) | MPI MOLGEN GCA_000534875.1 | 2014-04-15 | 2014-04-15 | 2018-10-21 | 79.903% |
| 45 | calAnn1 | Calypte anna | Anna's hummingbird | Jun 2014 (ASM69908v1/calAnn1) | BGI GCA_000699085.1 | 2014-06-27 | 2014-06-30 | 2018-10-18 | 79.733% |
| 46 | acaChl1 | Acanthisitta chloris | Rifleman | 27 May 2014 (ASM69581v1/acaChl1) | BGI GCA_000695815.1 | 2014-06-26 | 2014-06-30 | 2018-10-17 | 79.489% |
| 47 | ficAlb2 | Ficedula albicollis | Collared flycatcher | Jun 2013 (FicAlb1.5/ficAlb2) | Uppsala University GCA_000247815.2 | 2013-06-29 | 2013-06-29 | 2018-10-17 | 79.354% |
| 48 | geoFor1 | Geospiza fortis | Medium ground finch | Apr. 2012 (GeoFor_1.0/geoFor1) | Beijing Genomics Institute | 2012-07-26 | 2012-07-26 | 2018-10-19 | 79.299% |
| 49 | zonAlb1 | Zonotrichia albicollis | White-throated sparrow | Apr 2013 (ASM38545v1/zonAlb1) | White-throated sparrow consortium GCA_000385455.1 | 2013-06-26 | 2013-06-26 | 2018-10-16 | 78.645% |
| 50 | araMac1 | Ara macao | Scarlet macaw | Jun 2013 (SMACv1.1/araMac1) | Texas A&M University GCA_000400695.1 | 2013-06-28 | 2013-06-28 | 2018-10-17 | 76.180% |
| 51 | picPub1 | Picoides pubescens | Downy woodpecker | Jun 2014 (ASM69900v1/picPub1) | BGI GCA_000699005.1 | 2014-07-01 | 2014-07-02 | 2018-10-21 | 74.258% |
| 52 | taeGut2 | Taeniopygia guttata | Zebra finch | Feb. 2013 (WashU taeGut324/taeGut2) | Washington University School of Medicine | 2013-06-05 | 2013-06-05 | 2018-10-17 | 73.989% |
| 53 | tinGut2 | Tinamus guttatus | White throated tinamou | Aug 2014 (ASM70537v2/tinGut2) | BGI GCA_000705375.2 | 2014-08-14 | 2014-08-15 | 2018-10-17 | 73.577% |
| 54 | chrPic2 | Chrysemys picta bellii | Painted turtle | Mar. 2014 (v3.0.3/chrPic2) | International Painted Turtle Genome Sequencing Consortium | 2014-04-29 | 2014-04-10 | 2018-10-18 | 51.724% |
| 55 | cheMyd1 | Chelonia mydas | Green seaturtle | Mar 2013 (CheMyd_1.0/cheMyd1) | BGI GCA_000344595.1 | 2013-08-26 | 2013-08-26 | 2018-10-18 | 51.019% |
| 56 | allSin1 | Alligator sinensis | Chinese alligator | 29 Aug 2013 (ASM45574v1/allSin1) | BGI-shenzhen GCA_000455745.1 | 2013-09-06 | 2013-09-06 | 2018-10-17 | 46.056% |
| 57 | allMis1 | Alligator mississippiensis | American alligator | Aug. 2012 (allMis0.2/allMis1) | International Crocodilian Genomes Working Group | 2013-06-07 | 2012-08-28 | 2018-10-17 | 44.801% |
| 58 | pelSin1 | Pelodiscus sinensis | Chinese softshell turtle | Oct 2011 (PelSin_1.0/pelSin1) | Soft-shell Turtle Genome Consortium GCA_000230535.1 | 2013-07-01 | 2013-07-01 | 2018-10-20 | 41.985% |
| 59 | apaSpi1 | Apalone spinifera | Spiny softshell turtle | May 2013 (ASM38561v1/apaSpi1) | WUGSC GCA_000385615.1 | 2013-08-26 | 2013-08-26 | 2018-10-17 | 38.375% |
| 60 | pytBiv1 | Python bivittatus | Burmese python | Sep. 2013 (Python_molurus_bivittatus-5.0.2/pytBiv1) | The Consortium for Comparative Genomics, UC Denver GCA_000186305.2 | 2014-04-11 | 2014-04-10 | 2018-10-21 | 15.806% |
| 61 | anoCar2 | Anolis carolinensis | Lizard | May 2010 (Broad AnoCar2.0/anoCar2) | Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) | 2011-04-12 | 2011-04-13 | 2018-10-17 | 14.527% |
| 62 | thaSir1 | Thamnophis sirtalis | Garter snake | Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1) | The Genome Institute at Washington University School of Medicine (WUGSC) | 2018-03-12 | 2018-03-12 | 2018-10-21 | 11.754% |
| 63 | xenTro9 | Xenopus tropicalis | X. tropicalis | Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9) | DOE Joint Genome Institute | 2017-03-27 | 2017-03-27 | 2018-10-17 | 8.102% |
| 64 | xenLae2 | Xenopus laevis | African clawed frog | Aug. 2016 (Xenopus_laevis_v2/xenLae2) | International Xenopus Sequencing Consortium | 2017-03-29 | 2017-03-29 | 2018-10-21 | 7.927% |
| 65 | nanPar1 | Nanorana parkeri | Tibetan frog | Mar. 2015 (BGI_ZX_2015/nanPar1) | ASM93562v1 | 2015-03-19 | 2015-03-20 | 2018-10-20 | 7.564% |
| 66 | hg38 | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.15) | 2014-01-10 | 2013-12-25 | 2018-10-12 | 11.459% |
| 67 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2018-10-12 | 8.388% |
| 68 | danRer11 | Danio rerio | Zebrafish | May 2017 (GRCz11/danRer11) | Genome Reference Consortium Zebrafish Build 11 (GCA_000002035.4) | 2017-06-06 | 2017-06-02 | 2018-10-17 | 6.352% |
| 69 | angJap1 | Anguilla japonica | Japanese eel | 18 Mar-2014 (japanese_eel_genome_v1_25_oct_2011 japonica_c401b400k25m200 sspacepremiumk3a02n24 extra.final.scaffolds/angJap1) | ZF-screens B.V. GCA_000470695.1 | 2014-04-15 | 2014-04-16 | 2018-10-17 | 5.408% |
| 70 | oreNil3 | Oreochromis niloticus | Nile tilapia | Nov. 2016 (ASM185804v2/oreNil3) | University of Maryland | 2017-07-27 | 2017-07-27 | 2018-10-20 | 4.925% |
| 71 | gasAcu1 | Gasterosteus aculeatus | Stickleback | Feb. 2006 (Broad/gasAcu1) | Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) | 2009-08-15 | 2009-08-15 | 2018-10-17 | 4.623% |
| 72 | oryLat2 | Oryzias latipes | Medaka | Oct. 2005 (NIG/UT MEDAKA1/oryLat2) | NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) | 2009-08-15 | 2009-08-15 | 2018-10-20 | 4.565% |
| 73 | mayZeb1 | Maylandia zebra | Zebra mbuna | Mar 2012 (MetZeb1.1/mayZeb1) | Broad Institute GCA_000238955.2 | 2013-08-28 | 2013-08-28 | 2018-10-20 | 4.539% |
| 74 | tetNig2 | Tetraodon nigroviridis | Tetraodon | Mar. 2007 (Genoscope 8.0/tetNig2) | Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) | 2010-06-07 | 2009-09-02 | 2018-10-21 | 4.148% |
| 75 | fr3 | Takifugu rubripes | Fugu | Oct. 2011 (FUGU5/fr3) | Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) | 2011-11-16 | 2011-11-17 | 2018-10-17 | 4.007% |
| 76 | petMar3 | Petromyzon marinus | Lamprey | Dec. 2017 (Pmar_germline 1.0/petMar3) | University of Kentucky | 2018-01-12 | 2018-01-12 | 2018-10-17 | 3.658% |
| 77 | letCam1 | Lethenteron camtschaticum | Arctic lamprey | Sep 2013 (LetJap1.0/letCam1) | Institute of Molecular and Cell Biology GCA_000466285.1 | 2013-09-19 | 2013-09-19 | 2018-10-20 | 3.335% |
