GalGal6 77-way Genome size statistics

see also

• Chicken 77-way GalGal6 77-way conservation alignment
• Chicken 77-way GalGal6 77-way conservation lastz parameters
• all other UCSC Multiple Alignments

statistics collected from UCSC 2bit files

• The external link in the first column goes to the FTP location where the genome sequence was obtained
• The external links from the UCSC database name go to the UCSC genome-preview browser for that genome
• N bases == unknown bases in the assembly marked by "N"
• non-N bases == called bases in the assembly
• total size == all bases in assembly, N and non-N
• The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
• The common name external links go to information pages for this genome
• The coverage numbers are taken directly from information README files from the sequencing center
• The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order count/ ftp src	ucsc db name/ genome-preview	chrom count	total size	non-N bases	N base count	% masked	common name/ src info	coverage	N50 chrom.sizes	alignment type	% of galGal6 matched (chainLink table)	chain minScore	chain linearGap
01	galGal6	464	1,065,365,425	1,055,580,959	9,784,466	% 21.41	Chicken	82X	91315245	N/A	N/A	N/A	loose
02	melGal5	231,286	1,128,339,136	1,093,044,709	35,294,427	% 22.09	Turkey	35X	59006440	RecipBest	94.495%	1000	loose
03	cotJap2	2,012	927,656,957	917,259,253	10,397,704	% 20.11	Japanese quail	73X	82189922	RecipBest	90.071%	1000	loose
04	aquChr2	1,141	1,192,725,744	1,180,017,133	12,708,611	% 18.95	Golden eagle	88X	9230743	SyntenicNet	87.687%	1000	loose
05	halLeu1	1,023	1,178,409,481	1,159,246,344	19,163,137	% 18.79	Bald eagle		9145499	SyntenicNet	86.923%	1000	loose
06	nipNip1	59,555	1,223,863,029	1,189,447,576	34,415,453	% 19.25	Crested ibis		5211696	SyntenicNet	86.903%	1000	loose
07	aptFor1	10,672	1,254,347,440	1,182,540,656	71,806,784	% 19.06	Emperor penguin		5071598	SyntenicNet	86.834%	1000	loose
08	falPer1	7,021	1,171,973,431	1,153,404,348	18,569,083	% 18.69	Peregrine falcon	137.6X	3935757	SyntenicNet	86.500%	1000	loose
09	falChe1	5,863	1,174,811,715	1,150,993,769	23,817,946	% 18.62	Saker falcon	147X	4154532	SyntenicNet	86.342%	1000	loose
10	chaVoc2	15,167	1,219,859,583	1,185,946,782	33,912,801	% 20.01	Killdeer		3657050	SyntenicNet	86.267%	1000	loose
11	pygAde1	19,264	1,216,600,033	1,162,442,438	54,157,595	% 19.18	Adelie penguin		5118896	SyntenicNet	85.892%	1000	loose
12	egrGar1	11,791	1,206,501,934	1,157,806,531	48,695,403	% 19.80	Little egret		3067157	RecipBest	85.589%	1000	loose
13	anaPla1	78,488	1,105,052,351	1,069,972,754	35,079,597	% 20.21	Mallard duck	60X	1233631	RecipBest	85.509%	1000	loose
14	pelCri1	63,982	1,160,924,693	1,156,708,760	4,215,933	% 19.62	Dalmatian pelican		43364	RecipBest	85.344%	1000	loose
15	fulGla1	57,389	1,141,395,646	1,135,628,672	5,766,974	% 18.53	Northern fulmar		47208	RecipBest	85.332%	1000	loose
16	carCri1	53,474	1,132,245,425	1,127,945,763	4,299,662	% 18.33	Red-legged seriema		55197	RecipBest	85.094%	1000	loose
17	lepDis1	57,160	1,136,244,952	1,133,136,126	3,108,826	% 18.53	Cuckoo roller		62640	RecipBest	85.021%	1000	loose
18	halAlb1	50,905	1,133,549,865	1,128,456,298	5,093,567	% 18.23	White-tailed eagle		57319	RecipBest	84.997%	1000	loose
19	phoRub1	76,190	1,132,201,957	1,127,827,298	4,374,659	% 18.76	American flamingo		38071	RecipBest	84.793%	1000	loose
20	gavSte1	61,831	1,129,694,867	1,122,827,446	6,867,421	% 18.35	Red-throated loon		45523	RecipBest	84.717%	1000	loose
21	balPav1	53,491	1,127,622,286	1,123,527,683	4,094,603	% 18.94	Crowned crain		52178	RecipBest	84.687%	1000	loose
22	opiHoa1	10,256	1,203,712,246	1,142,165,867	61,546,379	% 19.75	Hoatzin		2937227	RecipBest	84.579%	1000	loose
23	phaLep1	66,785	1,152,958,507	1,147,080,466	5,878,041	% 19.71	White-tailed tropicbird		47896	RecipBest	84.519%	1000	loose
24	tauEry1	59,587	1,155,540,733	1,148,734,661	6,806,072	% 20.59	Red crested turaco		56334	RecipBest	84.485%	1000	loose
25	phaCar1	64,312	1,138,967,842	1,130,205,178	8,762,664	% 18.22	Great cormorant		48427	RecipBest	84.182%	1000	loose
26	tytAlb1	62,122	1,120,143,088	1,111,297,855	8,845,233	% 18.58	Barn owl		52818	RecipBest	84.122%	1000	loose
27	capCar1	70,122	1,119,683,066	1,115,277,614	4,405,452	% 20.58	Chuck-will's-widow		46345	RecipBest	83.573%	1000	loose
28	cucCan1	14,930	1,153,894,225	1,126,420,809	27,473,416	% 20.36	Common cuckoo		2989832	RecipBest	83.150%	1000	loose
29	colLiv1	14,923	1,107,989,085	1,086,925,875	21,063,210	% 19.83	Rock pigeon	60X	3148738	SyntenicNet	83.073%	1000	loose
30	chlUnd1	59,693	1,086,566,339	1,082,961,347	3,604,992	% 20.11	Houbara bustard		45221	RecipBest	83.041%	1000	loose
31	mesUni1	67,520	1,087,290,853	1,083,478,027	3,812,826	% 19.49	Brown roatelo		47102	RecipBest	82.649%	1000	loose
32	pteGut1	58,607	1,069,324,295	1,065,718,737	3,605,558	% 19.33	Yellow-throated sandgrouse		49530	RecipBest	82.523%	1000	loose
33	eurHel1	62,699	1,088,019,637	1,083,028,646	4,990,991	% 18.93	Sunbittern		47243	RecipBest	82.426%	1000	loose
34	strCam1	6,915	1,225,041,896	1,184,788,736	40,253,160	% 18.41	Ostrich		3593425	RecipBest	82.389%	1000	loose
35	melUnd1	25,212	1,117,373,619	1,086,614,815	30,758,804	% 19.62	Budgerigar	7X	10614383	SyntenicNet	81.694%	1000	loose
36	merNub1	53,499	1,062,961,556	1,058,508,606	4,452,950	% 19.36	Northern carmine bee-eater		48089	RecipBest	81.018%	1000	loose
37	apaVit1	54,728	1,070,836,417	1,066,296,614	4,539,803	% 19.97	Bar tailed trogon		56673	RecipBest	81.010%	1000	loose
38	colStr1	70,188	1,075,931,597	1,072,170,539	3,761,058	% 19.51	Speckled mousebird		46063	RecipBest	80.987%	1000	loose
39	corBra1	10,547	1,091,312,783	1,051,781,861	39,530,922	% 19.16	American crow		6953989	SyntenicNet	80.978%	1000	loose
40	bucRhi1	62,257	1,065,782,791	1,048,779,794	17,002,997	% 18.06	Rhinoceros hornbill		53203	RecipBest	80.812%	1000	loose
41	pseHum1	5,406	1,042,997,632	1,030,030,436	12,967,196	% 20.21	Tibetan ground jay	96.25X	16337386	SyntenicNet	80.622%	1000	loose
42	amaVit1	182,974	1,175,404,042	1,128,255,752	47,148,290	% 18.36	Parrot	24X	19239	RecipBest	80.577%	1000	loose
43	corCor1	1,298	1,049,947,905	1,022,448,831	27,499,074	% 19.02	Hooded crow		16358221	SyntenicNet	80.574%	1000	loose
44	serCan1	304,397	1,152,095,537	1,127,230,315	24,865,222	% 21.84	Canary		17815079	SyntenicNet	79.903%	1000	loose
45	calAnn1	54,736	1,105,676,412	1,067,027,607	38,648,805	% 20.21	Anna's hummingbird		4052191	SyntenicNet	79.733%	1000	loose
46	acaChl1	53,876	1,035,892,472	1,031,114,448	4,778,024	% 18.45	Rifleman		64469	RecipBest	79.489%	1000	loose
47	ficAlb2	21,428	1,118,343,587	1,102,323,882	16,019,705	% 24.04	Collared flycatcher	60X	64724594	SyntenicNet	79.354%	1000	loose
48	geoFor1	27,239	1,065,292,181	1,041,286,029	24,006,152	% 19.99	Medium ground finch	115X	5255844	SyntenicNet	79.299%	1000	loose
49	zonAlb1	6,018	1,052,600,561	1,006,293,510	46,307,051	% 20.03	White-throated sparrow	63X	4866725	SyntenicNet	78.645%	1000	loose
50	araMac1	192,790	1,204,700,227	997,522,769	207,177,458	% 16.49	Scarlet macaw	26X	15974	RecipBest	76.180%	1000	loose
51	picPub1	31,254	1,167,323,935	1,123,919,997	43,403,938	% 28.93	Downy woodpecker		2093929	RecipBest	74.258%	1000	loose
52	taeGut2	37,096	1,232,135,591	1,222,864,691	9,270,900	% 8.11	Zebra finch	5.5X	62374962	SyntenicNet	73.989%	1000	loose
53	tinGut2	82,514	1,047,056,493	1,024,813,426	22,243,067	% 19.39	White throated tinamou		246268	RecipBest	73.577%	1000	loose
54	chrPic2	78,595	2,365,766,562	2,173,204,089	192,562,473	% 31.52	Painted turtle	15X	7072151	SyntenicNet	51.724%	1000	loose
55	cheMyd1	140,023	2,208,410,377	2,110,381,997	98,028,380	% 29.65	Green seaturtle	110X	3864108	RecipBest	51.019%	1000	loose
56	allSin1	9,317	2,270,567,745	2,198,602,449	71,965,296	% 37.95	Chinese alligator		2188296	RecipBest	46.056%	1000	loose
57	allMis1	14,645	2,174,259,888	2,128,720,123	45,539,765	% 37.18	American alligator	68X	508966	RecipBest	44.801%	1000	loose
58	pelSin1	19,904	2,202,483,752	2,106,639,384	95,844,368	% 33.82	Chinese softshell turtle	105X	3350749	RecipBest	41.985%	1000	loose
59	apaSpi1	286,620	1,931,078,847	1,877,982,184	53,096,663	% 29.87	Spiny softshell turtle	33.4X	2306994	RecipBest	38.375%	1000	loose
60	pytBiv1	39,113	1,435,052,152	1,384,550,427	50,501,725	% 26.24	Burmese python		213970	Net	15.806%	1000	loose
61	anoCar2	6,457	1,799,143,587	1,701,353,767	97,789,820	% 41.98	Lizard	7.1X	150641573	Net	14.527%	1000	loose
62	thaSir1	7,930	1,424,897,867	1,122,623,622	302,274,245	% 34.39	Garter snake	72X	647592	Net	11.754%	1000	loose
63	xenTro9	6,822	1,440,398,454	1,369,865,365	70,533,089	% 34.42	X. tropicalis	7.6X	135134832	Net	8.102%	1000	loose
64	xenLae2	108,033	2,718,433,805	2,408,724,787	309,709,018	% 40.59	African clawed frog	30X	136570856	Net	7.927%	1000	loose
65	nanPar1	25,187	2,053,849,526	1,977,771,384	76,078,142	% 38.90	Tibetan frog	83X	1069101	Net	7.564%	1000	loose
66	hg38	595	3,257,347,282	3,095,978,588	161,368,694	% 52.10	Human	20X	145138636	Net	11.459%	5000	loose
67	mm10	66	2,730,871,774	2,652,783,500	78,088,274	% 45.18	Mouse	20X	130694993	Net	8.388%	5000	loose
68	danRer11	1,923	1,679,203,469	1,674,509,851	4,693,618	% 51.76	Zebrafish	30X	52186027	Net	6.352%	1000	loose
69	angJap1	323,727	1,151,134,083	1,024,038,278	127,095,805	% 24.46	Japanese eel		52849	Net	5.408%	1000	loose
70	oreNil3	2,567	1,009,856,516	1,005,626,515	4,230,001	% 31.17	Nile tilapia	44X	37007722	Net	4.925%	1000	loose
71	gasAcu1	23	463,354,448	446,627,861	16,726,587	% 2.58	Stickleback	6X	20083130	Net	4.623%	1000	loose
72	oryLat2	7,189	869,000,216	700,386,597	168,613,619	% 33.09	Medaka	10.6X	29908082	Net	4.565%	1000	loose
73	mayZeb1	3,725	849,595,388	713,527,863	136,067,525	% 25.04	Zebra mbuna	129.7X	3702874	Net	4.539%	1000	loose
74	tetNig2	27	358,618,246	302,314,788	56,303,458	% 20.27	Tetraodon	7.9X	13390619	Net	4.148%	1000	loose
75	fr3	6,835	391,484,715	350,961,831	40,522,884	% 19.01	Fugu	8.5X	11516971	Net	4.007%	1000	loose
76	petMar3	12,062	1,130,433,897	1,043,181,598	87,252,299	% 45.11	Lamprey	100.0X	11932523	Net	3.658%	1000	loose
77	letCam1	86,126	1,030,678,995	853,452,256	177,226,739	% 42.40	Arctic lamprey		1051965	Net	3.335%	1000	loose