Ce11 135-way Genome size statistics

see also

• C. elegans 135-way Ce11 135-way conservation alignment
• C. elegans 135-way Ce11 135-way conservation lastz parameters
• all other UCSC Multiple Alignments

statistics collected from UCSC 2bit files

• The external link in the first column goes to the FTP location where the genome sequence was obtained
• The external links from the UCSC database name go to the UCSC genome-preview browser for that genome
• N bases == unknown bases in the assembly marked by "N"
• non-N bases == called bases in the assembly
• total size == all bases in assembly, N and non-N
• The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
• The common name external links go to information pages for this genome
• The coverage numbers are taken directly from information README files from the sequencing center
• The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order count/ ftp src	ucsc db name/ genome-preview	chrom count	total size	non-N bases	N base count	% masked	common name/ src info	coverage	N50 chrom.sizes	alignment type	% of ce11 matched (chainLink table)	chain minScore	chain linearGap
[N/A 01]	ce11	7	100,286,401	100,286,401	0	% 12.62	C. elegans	30X	17493829	N/A	100.000%	10000	medium
02	C_sp38_MB_2015	4,890	100,371,645	100,282,591	89,054	% 34.42	C_sp38_MB_2015	200X	139430	Net	43.814%	1000	loose
[N/A 03]	caeAng2	34,621	105,997,628	94,555,035	11,442,593	% 39.91	C. angaria	170X	79858	Net	39.417%	1000	loose
[ 04]	caeJap4	18,817	166,256,191	154,057,934	12,198,257	% 46.77	C. japonica	22X	94149	Net	45.308%	1000	loose
05	C_sp34_TK_2017	6	122,994,328	122,580,819	413,509	% 33.39	C_sp34_TK_2017	300X	20594552	Net	53.670%	1000	loose
06	C_briggsae	367	108,384,165	105,416,539	2,967,626	% 35.35	C_briggsae	10X	17485439	Net	N/A	1000	N/A
[N/A 07]	cb4	13	108,434,085	105,430,959	3,003,126	% 36.52	C. briggsae	10X	17485439	Net	39.384%	1000	loose
08	C_nigoni	155	129,488,540	129,435,387	53,153	% 36.16	C_nigoni	96.8X	20390332	Net	62.531%	1000	loose
09	C_sp26_LS_2015	3,128	101,089,037	100,865,289	223,748	% 32.77	C_sp26_LS_2015	200X	91328	Net	59.618%	1000	loose
[N/A 10]	caeSp51	15,261	131,797,386	130,391,159	1,406,227	% 28.16	C. sp. 5 ju800		25228	Net	40.332%	1000	loose
11	C_sp40_LS_2015	3,276	101,228,815	101,072,304	156,511	% 24.65	C_sp40_LS_2015	200X	224519	Net	52.955%	1000	loose
12	C_latens	1,858	117,124,750	104,590,567	12,534,183	% 26.86	C_latens	350.0X	366678	Net	57.873%	1000	loose
[N/A 13]	caeRem4	3,670	145,442,736	138,406,203	7,036,533	% 30.48	C. remanei	9.2X	435512	Net	61.020%	1000	loose
[ 14]	caePb3	3,305	190,369,721	170,093,638	20,276,083	% 29.30	C. brenneri	9.5X	381961	Net	59.069%	1000	loose
[ 15]	caeSp111	665	79,321,433	76,497,192	2,824,241	% 29.15	C. tropicalis	20.2X	20921866	Net	55.203%	1000	loose
16	C_sp31_LS_2015	3,222	104,046,868	103,015,225	1,031,643	% 27.24	C_sp31_LS_2015	200X	177024	Net	41.026%	1000	loose
17	C_sp21_LS_2015	5,719	93,737,141	92,695,675	1,041,466	% 30.49	C_sp21_LS_2015	200X	44405	Net	23.081%	1000	loose
18	C_sp32_LS_2015	2,044	65,098,870	64,717,952	380,918	% 23.41	C_sp32_LS_2015	200X	136669	Net	38.533%	1000	loose
19	C_sp39_LS_2015	21,203	91,416,478	90,256,594	1,159,884	% 27.60	C_sp39_LS_2015	200X	15123	Net	44.315%	1000	loose
20	Pristionchus_arcanus	4,263	202,757,162	194,517,820	8,239,342	% 22.89	Pristionchus_arcanus	100X	270727	Net	13.074%	1000	loose
21	Pristionchus_exspectatus	4,412	177,635,997	167,014,498	10,621,499	% 22.17	Pristionchus_exspectatus	100X	142227	Net	12.342%	1000	loose
[N/A 22]	priExs1	4,369	177,536,987	166,915,502	10,621,485	% 23.30	P. exspectatus		142245	Net	6.222%	1000	loose
23	Pristionchus_pacificus	134	154,958,356	154,958,356	0	% 24.36	Pristionchus_pacificus	100.0X	4619064	Net	12.987%	1000	loose
[N/A 24]	priPac3	18,084	172,510,819	153,208,199	19,302,620	% 23.93	P. pacificus		1244534	Net	6.308%	1000	loose
25	Pristionchus_maxplancki	69,506	265,592,641	222,408,857	43,183,784	% 25.76	Pristionchus_maxplancki	50X	308886	Net	12.880%	1000	loose
26	Pristionchus_entomophagus	72,721	264,161,588	242,231,587	21,930,001	% 28.71	Pristionchus_entomophagus	36X	368542	Net	12.602%	1000	loose
27	Bursaphelenchus_xylophilus	10,432	73,085,728	73,085,728	0	% 28.29	Bursaphelenchus_xylophilus		18150	Net	13.470%	1000	loose
[N/A 28]	burXyl1	5,528	74,576,239	73,100,506	1,475,733	% 28.93	Pine wood nematode		949830	Net	6.291%	1000	loose
29	Subanguina_moxae	15,010	90,131,014	90,087,259	43,755	% 30.27	Subanguina_moxae	30X	14601	Net	11.549%	1000	loose
30	Oscheius_MCB	11,377	38,321,349	38,321,349	0	% 24.16	Oscheius_MCB	1.0X	4474	Net	6.427%	1000	loose
31	Oscheius_TEL_2014	73,786	117,474,248	117,290,108	184,140	% 23.66	Oscheius_TEL_2014	30.0X	2785	Net	15.278%	1000	loose
32	Angiostrongylus_cantonensis	17,280	260,768,283	235,574,657	25,193,626	% 27.52	Angiostrongylus_cantonensis	91.0X	42141	Net	12.624%	1000	loose
33	Necator_americanus	11,864	244,075,060	208,173,610	35,901,450	% 25.14	Necator_americanus	26.15X	211861	Net	15.754%	1000	loose
[N/A 34]	necAme1	11,865	244,088,665	208,187,215	35,901,450	% 25.80	N. americanus	26.15X	211861	Net	8.902%	1000	loose
35	Nippostrongylus_brasiliensis	3,578	347,480,154	347,480,154	0	% 28.36	Nippostrongylus_brasiliensis	24X	209980	Net	15.792%	1000	loose
36	Ancylostoma_caninum	25,335	465,734,117	402,781,093	62,953,024	% 22.71	Ancylostoma_caninum	33.6X	256738	Net	16.527%	1000	loose
37	Ancylostoma_duodenale	69,981	332,875,813	322,827,410	10,048,403	% 18.11	Ancylostoma_duodenale	19.00X	10138	Net	15.004%	1000	loose
[N/A 38]	ancCey1	1,736	313,092,710	300,901,610	12,191,100	% 22.06	A. ceylanicum	76X	668412	Net	15.964%	1000	loose
39	Ascaris_suum	415	298,028,455	297,011,616	1,016,839	% 21.25	Ascaris_suum	84.0X	4646302	Net	13.175%	1000	loose
[N/A 40]	ascSuu1	12,989	269,573,965	262,604,319	6,969,646	% 21.48	Pig roundworm	90X	413062	Net	5.722%	1000	loose
41	Parascaris_univalens	484	242,743,000	241,715,821	1,027,179	% 17.11	Parascaris_univalens	110.0X	1878535	Net	11.720%	1000	loose
42	Toxocara_canis	22,857	317,115,901	298,641,369	18,474,532	% 18.23	Toxocara_canis	246X	375067	Net	11.502%	1000	loose
43	Oesophagostomum_dentatum	64,255	443,017,110	351,605,877	91,411,233	% 22.59	Oesophagostomum_dentatum	15.0X	26462	Net	14.994%	1000	loose
44	Haemonchus_contortus	12,915	319,757,902	295,953,914	23,803,988	% 18.20	Haemonchus_contortus	184X	99131	Net	14.406%	1000	loose
[N/A 45]	haeCon2	23,823	369,720,058	345,915,897	23,804,161	% 21.16	Barber pole worm		83299	Net	8.936%	1000	loose
46	Teladorsagia_circumcincta	81,730	700,607,159	576,109,770	124,497,389	% 26.07	Teladorsagia_circumcincta	12.20X	47089	Net	14.484%	1000	loose
47	Clonorchis_sinensis	4,348	547,288,241	547,104,041	184,200	% 18.09	Clonorchis_sinensis	72X	417486	Net	3.450%	1000	loose
48	Opisthorchis_viverrini	42,216	620,452,578	572,111,430	48,341,148	% 17.53	Opisthorchis_viverrini	54.0X	1349843	Net	3.444%	1000	loose
49	Dicrocoelium_dendriticum	478,538	547,921,014	424,790,813	123,130,201	% 15.14	Dicrocoelium_dendriticum	49X	1217	Net	0.832%	1000	loose
50	Elaeophora_elaphi	1	1,480,825	1,478,571	2,254	% 0.88	Elaeophora_elaphi	250X	1480825	Net	0.158%	1000	loose
51	Macrostomum_lignano	5,269	764,410,778	762,829,307	1,581,471	% 29.86	Macrostomum_lignano	180X	246204	Net	13.379%	1000	loose
52	Fasciola_gigantica	167,286	1,273,710,336	1,031,267,733	242,442,603	% 18.71	Fasciola_gigantica	30.0X	15613	Net	3.502%	1000	loose
53	Fasciola_hepatica	2,816	1,203,652,780	1,163,484,157	40,168,623	% 23.13	Fasciola_hepatica	50X	1903231	Net	4.266%	1000	loose
54	Spirometra_erinaceieuropaei	482,396	1,258,717,181	1,130,704,756	128,012,425	% 26.08	Spirometra_erinaceieuropaei	51X	4636	Net	2.894%	1000	loose
55	Heligmosomoides_polygyrus_bakeri	23,647	696,954,138	692,450,925	4,503,213	% 36.47	Heligmosomoides_polygyrus_bakeri	100X	179575	Net	14.696%	1000	loose
56	Oscheius_tipulae	191	59,468,623	59,452,313	16,310	% 12.36	Oscheius_tipulae	200X	1203411	Net	16.438%	1000	loose
57	Steinernema_carpocapsae	1,562	85,934,671	83,531,658	2,403,013	% 14.24	Steinernema_carpocapsae	330.0X	300606	Net	12.640%	1000	loose
58	Steinernema_scapterisci	2,864	79,651,268	78,888,856	762,412	% 8.86	Steinernema_scapterisci	95.0X	91123	Net	11.987%	1000	loose
59	Steinernema_feltiae	5,834	82,504,363	79,710,583	2,793,780	% 10.79	Steinernema_feltiae	139.0X	47568	Net	11.885%	1000	loose
60	Steinernema_glaseri	7,510	92,836,338	89,456,487	3,379,851	% 9.46	Steinernema_glaseri	57.0X	37444	Net	10.278%	1000	loose
61	Echinococcus_canadensis	9,330	115,024,622	115,022,610	2,012	% 10.95	Echinococcus_canadensis	55X	74555	Net	3.383%	1000	loose
62	Echinococcus_granulosus	957	110,837,706	110,106,964	730,742	% 11.98	Echinococcus_granulosus	102X	712683	Net	3.234%	1000	loose
63	Echinococcus_multilocularis	1,217	114,963,228	112,135,503	2,827,725	% 11.00	Echinococcus_multilocularis	150X	13762452	Net	3.403%	1000	loose
64	Taenia_asiatica	6,900	168,679,183	164,406,061	4,273,122	% 10.32	Taenia_asiatica	90.0X	342420	Net	3.396%	1000	loose
65	Taenia_saginata	3,626	169,104,283	166,314,755	2,789,528	% 10.25	Taenia_saginata	90.0X	586235	Net	3.457%	1000	loose
66	Taenia_multiceps	738	301,477,105	301,298,205	178,900	% 19.60	Taenia_multiceps	120.0X	44815576	Net	3.712%	1000	loose
67	Taenia_solium	13,131	129,810,970	129,764,172	46,798	% 10.30	Taenia_solium	110.0X	165960	Net	3.268%	1000	loose
68	Trichuris_muris	1,683	84,405,302	84,136,002	269,300	% 16.59	Trichuris_muris	256X	399802	Net	5.651%	1000	loose
69	Trichuris_trichiura	4,156	75,496,394	75,481,916	14,478	% 14.38	Trichuris_trichiura	282X	70602	Net	6.137%	1000	loose
[N/A 70]	triSui1	4,293	74,248,995	71,825,189	2,423,806	% 12.36	Whipworm	140X	503034	Net	2.917%	1000	loose
71	Plectus_sambesii	18,975	186,672,612	186,593,363	79,249	% 15.71	Plectus_sambesii	250.0X	23450	Net	11.406%	1000	loose
72	Steinernema_monticolum	14,252	89,158,954	84,806,581	4,352,373	% 14.69	Steinernema_monticolum	61.0X	11563	Net	12.825%	1000	loose
[N/A 73]	panRed1	941	65,110,236	62,090,108	3,020,128	% 14.57	Microworm		262414	Net	6.585%	1000	loose
74	Diploscapter_coronatus	520	170,492,099	169,445,850	1,046,249	% 26.50	Diploscapter_coronatus	50X	1007652	Net	24.970%	1000	loose
75	Diploscapter_pachys	10,775	157,719,873	156,503,834	1,216,039	% 26.28	Diploscapter_pachys	271.0X	124241	Net	23.687%	1000	loose
76	Brugia_malayi	24,286	93,659,149	87,069,521	6,589,628	% 34.60	Brugia_malayi		41308	Net	16.763%	1000	loose
[N/A 77]	bruMal2	9,781	95,156,665	87,397,445	7,759,220	% 38.02	Filarial worm		200860	Net	5.065%	1000	loose
78	Brugia_pahangi	15,835	83,528,896	82,472,903	1,055,993	% 39.53	Brugia_pahangi	40.0X	156844	Net	19.944%	1000	loose
79	Wuchereria_bancrofti	5,105	90,325,107	90,283,428	41,679	% 36.74	Wuchereria_bancrofti	200.0X	56670	Net	20.673%	1000	loose
80	Dirofilaria_immitis	25,560	84,888,114	84,878,920	9,194	% 37.45	Dirofilaria_immitis		15147	Net	20.305%	1000	loose
[N/A 81]	dirImm1	16,062	88,323,343	84,892,734	3,430,609	% 39.12	Dog heartworm		71281	Net	5.005%	1000	loose
82	Onchocerca_ochengi	20,243	91,660,559	91,277,801	382,758	% 34.19	Onchocerca_ochengi	76X	16199	Net	19.777%	1000	loose
83	Onchocerca_volvulus	674	96,340,582	93,266,462	3,074,120	% 35.72	Onchocerca_volvulus		25485961	Net	25.170%	1000	loose
[N/A 84]	oncVol1	710	97,402,144	94,327,777	3,074,367	% 37.03	O. volvulus		25485961	Net	5.193%	1000	loose
85	Loa_loa	5,764	91,365,832	87,518,593	3,847,239	% 30.83	Loa_loa	20X	174388	Net	16.698%	1000	loose
[N/A 86]	loaLoa1	5,765	91,379,422	87,532,183	3,847,239	% 32.15	Eye worm	20X	174388	Net	5.056%	1000	loose
87	Setaria_digitata	8,974	89,886,140	89,881,517	4,623	% 30.01	Setaria_digitata	40X	24961	Net	16.319%	1000	loose
88	Setaria_equina	17,604	78,096,315	77,473,044	623,271	% 33.31	Setaria_equina	12.5X	25640	Net	14.600%	1000	loose
89	Onchocerca_flexuosa	1,604	67,740,367	62,736,202	5,004,165	% 32.14	Onchocerca_flexuosa	66.0X	540294	Net	15.520%	1000	loose
90	Dugesia_japonica	648,594	854,187,087	829,788,678	24,398,409	% 51.27	Dugesia_japonica	30.0X	1740	Net	17.785%	1000	loose
91	Girardia_tigrina	255,254	1,428,149,015	1,325,664,825	102,484,190	% 51.16	Girardia_tigrina	90.0X	12094	Net	37.989%	1000	loose
92	Schmidtea_mediterranea	1,990	942,041,730	941,969,851	71,879	% 54.04	Schmidtea_mediterranea	60.0X	2910179	Net	39.093%	1000	loose
93	Meloidogyne_arenaria	2,224	284,032,373	284,032,373	0	% 48.48	Meloidogyne_arenaria	60.0X	204551	Net	31.303%	1000	loose
94	Meloidogyne_javanica	31,341	235,798,407	235,486,090	312,317	% 47.83	Meloidogyne_javanica	100X	10388	Net	26.293%	1000	loose
95	Meloidogyne_incognita	12,091	183,531,997	180,212,183	3,319,814	% 47.89	Meloidogyne_incognita	100X	38588	Net	26.760%	1000	loose
96	Meloidogyne_floridensis	58,696	96,673,063	94,894,093	1,778,970	% 45.57	Meloidogyne_floridensis	200X	3698	Net	12.683%	1000	loose
[N/A 97]	melInc2	2,996	86,079,534	82,112,681	3,966,853	% 43.99	M. incognita		62516	Net	3.516%	1000	loose
98	Meloidogyne_graminicola	4,304	38,184,958	37,468,966	715,992	% 56.64	Meloidogyne_graminicola	181.65X	20482	Net	17.004%	1000	loose
[N/A 99]	melHap1	3,452	53,017,507	53,017,507	0	% 52.96	M. hapla	10.4X	37608	Net	3.916%	1000	loose
100	Parastrongyloides_trichosuri	1,810	42,486,966	42,219,646	267,320	% 42.20	Parastrongyloides_trichosuri	259X	836942	Net	28.310%	1000	loose
101	Strongyloides_papillosus	4,703	60,447,969	60,381,969	66,000	% 43.56	Strongyloides_papillosus	794X	86359	Net	31.051%	1000	loose
102	Strongyloides_venezuelensis	587	52,178,999	52,138,309	40,690	% 44.12	Strongyloides_venezuelensis	1220X	715404	Net	31.839%	1000	loose
103	Strongyloides_stercoralis	800	42,674,647	42,661,029	13,618	% 51.71	Strongyloides_stercoralis	1133X	431128	Net	35.984%	1000	loose
[N/A 104]	strRat2	135	43,150,242	42,896,169	254,073	% 55.64	Threadworm		11693564	Net	36.164%	1000	loose
105	Schistosoma_haematobium	29,834	375,894,156	352,694,554	23,199,602	% 32.39	Schistosoma_haematobium	74X	317484	Net	9.723%	1000	loose
106	Schistosoma_mansoni	885	364,538,298	362,511,929	2,026,369	% 35.65	Schistosoma_mansoni		32115376	Net	10.328%	1000	loose
107	Schistosoma_japonicum	25,048	402,743,189	369,022,049	33,721,140	% 27.72	Schistosoma_japonicum		176869	Net	7.825%	1000	loose
108	Dictyocaulus_viviparus	7,157	160,963,781	156,893,894	4,069,887	% 24.22	Dictyocaulus_viviparus	12.20X	225748	Net	17.480%	1000	loose
109	Hymenolepis_microstoma	3,643	182,136,974	160,748,421	21,388,553	% 20.27	Hymenolepis_microstoma	98X	7673820	Net	5.601%	1000	loose
110	Rhabditophanes_KR3021	471	47,267,908	47,120,089	147,819	% 25.63	Rhabditophanes_KR3021	598X	537195	Net	18.703%	1000	loose
[N/A 111]	ci3	1,272	115,227,500	112,162,838	3,064,662	% 31.69	C. intestinalis		5152901	Net	2.006%	1000	loose
[N/A 112]	hetBac1	1,241	76,992,477	74,374,900	2,617,577	% 24.47	H. bacteriophora/m31e	26.1X	312328	Net	10.486%	1000	loose
113	Gyrodactylus_salaris	6,075	67,380,660	67,348,207	32,453	% 28.46	Gyrodactylus_salaris	120.0X	18390	Net	6.686%	1000	loose
114	Parapristionchus_giblindavisi	7,303	200,833,897	178,308,095	22,525,802	% 34.34	Parapristionchus_giblindavisi	50X	112408	Net	15.865%	1000	loose
115	Ditylenchus_destructor	1,761	111,138,200	108,829,417	2,308,783	% 27.66	Ditylenchus_destructor	200.0X	561030	Net	14.413%	1000	loose
116	Trichinella_T6	5,951	50,853,738	50,567,997	285,741	% 33.49	Trichinella_T6	272X	158103	Net	11.008%	1000	loose
117	Trichinella_patagoniensis	6,623	49,773,209	49,674,626	98,583	% 33.36	Trichinella_patagoniensis	267X	154103	Net	10.836%	1000	loose
118	Trichinella_T8	4,124	49,331,761	49,096,326	235,435	% 33.13	Trichinella_T8	246X	239129	Net	10.902%	1000	loose
119	Trichinella_T9	5,752	49,075,249	48,785,687	289,562	% 33.36	Trichinella_T9	194X	212690	Net	10.885%	1000	loose
120	Trichinella_britovi	7,991	51,504,795	51,167,848	336,947	% 33.15	Trichinella_britovi	276X	147150	Net	10.944%	1000	loose
121	Trichinella_murrelli	503	64,723,107	64,697,294	25,813	% 35.45	Trichinella_murrelli	49.0X	17567319	Net	11.930%	1000	loose
122	Trichinella_nativa	4,443	47,933,238	47,801,520	131,718	% 33.48	Trichinella_nativa	242X	141195	Net	10.699%	1000	loose
123	Trichinella_nelsoni	2,969	47,436,005	47,222,616	213,389	% 33.40	Trichinella_nelsoni	232X	293867	Net	10.754%	1000	loose
124	Trichinella_spiralis	6,863	63,525,422	58,538,484	4,986,938	% 32.77	Trichinella_spiralis	34.6X	6373445	Net	N/A	1000	N/A
[N/A 125]	triSpi1	6,864	63,542,128	58,555,140	4,986,988	% 33.95	Trichinella	34.6X	6373445	Net	2.848%	1000	loose
126	Trichinella_papuae	2,542	46,844,510	46,693,037	151,473	% 34.96	Trichinella_papuae	297X	222396	Net	11.415%	1000	loose
127	Trichinella_zimbabwensis	10,839	50,795,114	50,474,353	320,761	% 35.19	Trichinella_zimbabwensis	178X	205645	Net	11.705%	1000	loose
128	Trichinella_pseudospiralis	7,462	48,106,863	48,104,622	2,241	% 35.44	Trichinella_pseudospiralis	262X	112255	Net	11.462%	1000	loose
129	Romanomermis_culicivorax	62,537	322,765,759	267,654,222	55,111,537	% 34.63	Romanomermis_culicivorax	70X	17632	Net	8.805%	1000	loose
130	Globodera_ellingtonae	2,246	105,964,814	105,004,745	960,069	% 39.16	Globodera_ellingtonae	50.0X	327189	Net	11.318%	1000	loose
131	Globodera_rostochiensis	4,281	95,876,286	91,457,744	4,418,542	% 37.01	Globodera_rostochiensis	435X	88688	Net	10.968%	1000	loose
132	Globodera_pallida	6,873	123,625,196	103,634,401	19,990,795	% 38.92	Globodera_pallida	145X	120481	Net	10.269%	1000	loose
133	Heterodera_glycines	34,708	81,908,042	80,778,247	1,129,795	% 38.68	Heterodera_glycines		3715	Net	7.254%	1000	loose
134	Rotylenchulus_reniformis	100,525	313,575,666	310,834,777	2,740,889	% 43.54	Rotylenchulus_reniformis	373.0X	22705	Net	16.345%	1000	loose
135	Acrobeloides_nanus	30,759	248,054,631	247,818,953	235,678	% 48.16	Acrobeloides_nanus	260X	19614	Net	23.468%	1000	loose