Hg38 7-way Genome size statistics

statistics collected from UCSC 2bit files

The external link in the first column goes to the FTP location where the genome sequence was obtained
The external links from the UCSC database name go to the UCSC genome-test browser for that genome
N bases == unknown bases in the assembly marked by "N"
non-N bases == called bases in the assembly
total size == all bases in assembly, N and non-N
The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
The common name external links go to information pages for this genome
The coverage numbers are taken directly from information README files from the sequencing center
The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

order count/ ftp src	ucsc db name/ genome-test	chrom count	total size	non-N bases	N base count	% masked	common name/ src info	coverage	N50 chrom.sizes	alignment type	% of hg38 matched (chainLink table)	chain minScore	chain linearGap
01	hg38	455	3,209,286,105	3,049,315,783	159,970,322	% 52.10	Human	20X	145138636	N/A	N/A	3000	medium
02	panTro4	24,129	3,309,577,922	2,902,338,967	407,238,955	% 51.29	Chimp	6X	143986469	SyntenicNet	93.112%	5000	medium
03	rheMac3	34,103	2,969,988,180	2,639,145,830	330,842,350	% 48.54	Rhesus	50X	150158102	SyntenicNet	79.729%	5000	medium
04	canFam3	3,268	2,410,976,875	2,392,715,236	18,261,639	% 43.01	Dog	7.6X	63241923	SyntenicNet	49.978%	3000	medium
05	mm10	66	2,730,871,774	2,652,783,500	78,088,274	% 45.18	Mouse	20X	130694993	SyntenicNet	31.629%	3000	medium
06	rn5	2,739	2,909,698,938	2,572,853,723	336,845,215	% 42.81	Rat	6X	154597545	SyntenicNet	30.788%	3000	medium
07	monDom5	11	3,605,631,728	3,501,660,299	103,971,429	% 55.95	Opossum	6.8X	527952102	Net	14.370%	5000	loose