PonAbe2 Genome size statistics

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see also

statistics collected from UCSC 2bit files

  • The external links from the UCSC database name go to the sequencing center information pages for this genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser
  • % masked == masked either with WindowMasker or RepeatMasker plus TRF simple repeats
  • % of ponAbe2 matched (chainLink table) == featureBits ponAbe2 chain<Db>Link == alignment coverage

do not edit, automatically generated table

order
count
ucsc
db name
chrom
count
total
size
non-N
bases
N base
count
% masked common name coverage N50
chrom.sizes
alignment type % of ponAbe2
matched
(chainLink table)
chain
minScore
chain
linearGap
01ponAbe2 55 3,446,771,3963,093,543,172 353,228,224% 50.89 Orangutan6X 135191526 N/AN/A 1000 loose
02hg18 49 3,107,677,2732,881,421,696 226,255,577% 48.85 Human20X 146274826 SyntenicNet91.302% 3000 medium
03panTro2 52 3,350,447,5122,909,246,738 441,200,774% 48.90 Chimp6X 145085868 SyntenicNet89.431% 3000 medium
04rheMac2 22 2,864,106,0712,646,668,809 217,437,262% 48.28 Rhesus5.1X 153947521 SyntenicNet82.623% 3000 medium
05calJac1 49,724 3,029,401,8402,929,124,957 100,276,883% 47.50 Marmoset6X 303154 RecipBest74.694% 3000 medium
06mm9 35 2,725,765,4812,620,345,972 105,419,509% 44.09 Mouse20X 131738871 SyntenicNet30.659% 3000 medium
07monDom4 10 3,605,614,6493,501,643,220 103,971,429% 55.69 Opossum6.5X 526135210 Net13.137% 5000 loose
08ornAna1 201,523 1,996,811,2121,842,235,522 154,575,690% 47.89 Platypus6X 991605 Net6.936% 5000 loose