Rn6 20-way conservation alignment
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see also
- Rat 20-way Rn6 20-way Genome size statistics
- Rat 20-way Rn6 20-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on rn6 |
% of rn6 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | rn6 | Rattus norvegicus | Rat | Jul. 2014 (RGSC 6.0/rn6) | RGSC Rnor_6.0 | 2014-07-08 | 2014-07-09 | N/A | N/A |
| 02 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2016-04-08 | 71.015% |
| 03 | micOch1 | Microtus ochrogaster | Prairie vole | Oct 2012 (MicOch1.0/micOch1) | Broad Institute GCA_000317375.1 | 2013-08-26 | 2013-08-26 | 2017-01-18 | 57.205% |
| 04 | cavPor3 | Cavia porcellus | Guinea pig | Feb. 2008 (Broad/cavPor3) | Broad Institute cavPor3 | 2009-08-15 | 2009-08-15 | 2017-01-13 | 27.834% |
| 05 | hg38 | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) | 2014-01-10 | 2013-12-25 | 2015-02-17 | 34.899% |
| 06 | panTro5 | Pan troglodytes | Chimp | May 2016 (Pan_tro 3.0/panTro5) | Chimpanzee Sequencing and Analysis Consortium | 2016-08-02 | 2016-08-02 | 2017-01-13 | 40.816% |
| 07 | tarSyr2 | Tarsius syrichta | Tarsier | Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) | Washington University | 2014-11-21 | 2014-11-22 | 2017-01-18 | 38.509% |
| 08 | rheMac8 | Macaca mulatta | Rhesus | Nov. 2015 (BCM Mmul_8.0.1/rheMac8) | Baylor College of Medicine Genome Sequencing Center | 2016-02-02 | 2016-02-02 | 2017-01-14 | 40.165% |
| 09 | canFam3 | Canis lupus familiaris | Dog | Sep. 2011 (Broad CanFam3.1/canFam3) | Broad CanFam3.1 (GCA_000002285.2) | 2012-01-05 | 2012-01-06 | 2017-01-13 | 28.540% |
| 10 | oryCun2 | Oryctolagus cuniculus | Rabbit | Apr. 2009 (Broad/oryCun2) | Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) | 2009-09-02 | 2013-06-21 | 2017-01-17 | 24.654% |
| 11 | felCat8 | Felis catus | Cat | Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) | International Cat Genome Sequencing Consortium | 2014-11-22 | 2014-11-22 | 2017-01-17 | 29.520% |
| 12 | ailMel1 | Ailuropoda melanoleuca | Panda | Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) | BGI-Shenzhen AilMel 1.0 Dec. 2009 | 2010-02-03 | 2013-06-21 | 2017-01-16 | 30.404% |
| 13 | bosTau8 | Bos taurus | Cow | Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) | University of Maryland Bos_taurus_UMD_3.1.1 | 2014-09-11 | 2014-09-12 | 2017-01-16 | 25.902% |
| 14 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2017-01-13 | 9.652% |
| 15 | ornAna2 | Ornithorhynchus anatinus | Platypus | Feb. 2007 (ASM227v2/ornAna2) | WUGSC ASM227v2 | 2015-03-10 | 2015-03-11 | 2017-01-18 | 6.389% |
| 16 | xenTro7 | Xenopus tropicalis | X. tropicalis | Sep. 2012 (JGI 7.0/xenTro7) | US DOE Joint Genome Institute (JGI-PGF) | 2013-06-21 | 2013-06-14 | 2017-01-12 | 4.104% |
| 17 | galGal5 | Gallus gallus | Chicken | Dec 2015 (Gallus_gallus-5.0/galGal5) | International Chicken Genome Consortium | 2016-04-14 | 2016-04-14 | 2016-05-03 | 3.983% |
| 18 | melGal5 | Meleagris gallopavo | Turkey | Nov. 2014 (Turkey_5.0/melGal5) | Turkey Genome Consortium | 2017-01-12 | 2017-01-13 | 2017-01-17 | 2.440% |
| 19 | calMil1 | Callorhinchus milii | Elephant shark | Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) | Institute of Molecular and Cell Biology, Singapore | 2014-04-01 | 2014-04-01 | 2017-01-18 | 1.664% |
| 20 | danRer10 | Danio rerio | Zebrafish | Sep. 2014 (GRCz10/danRer10) | Genome Reference Consortium Zebrafish Build 10 | 2015-01-26 | 2015-01-22 | 2015-09-18 | 3.232% |
