File list
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | User | Description | Versions |
|---|---|---|---|---|---|---|
| 17:09, 28 April 2018 | LastzProcessingTimeHistogram.png (file) |  |
53 KB | Hiram | lastz cluster compute time histogram 1,635 measurements from alignments performed at UCSC 459 measurements are less than 0.05 days (less than 1 hour) due to very small genome sizes 59 measurements are longer than 5 days processing time due to high c... | 1 |
| 23:13, 27 April 2018 | SizeVsTime.png (file) |  |
156 KB | Hiram | lastz cluster run processing time vs. genome size blue points plot times 2 days or less processing time, left axis scale 0 - 2 days red points plot times over 2 days processing time, right axis scale 0 - 70 days | 1 |
| 18:39, 24 April 2018 | UCSC BoG 2018 GtexPoster.pptx (file) |  |
749 KB | Kate | 1 | |
| 18:37, 24 April 2018 | UCSC BoG 2018 GtexPoster.pdf (file) |  |
732 KB | Kate | 1 | |
| 19:36, 18 April 2018 | UcscPostDoc 2018.pptx (file) | |
1.51 MB | Jairo Navarro | Powerpoint of the 2018 UCSC Postdoc Symposium made by Jairo Navarro. | 1 |
| 02:53, 6 April 2018 | ParasolInstall.sh.txt (file) |  |
1 KB | Hiram | adding git fetch of automation scripts into /data/scripts/ | 3 |
| 17:39, 20 March 2018 | CyberDuck CIRM-01.png (file) |  |
53 KB | Max | 1 | |
| 18:16, 5 March 2018 | UcscPostDoc 2018.pdf (file) | |
954 KB | Jairo Navarro | Jairo's poster for the 2018 UCSC Postdoc Symposium (March 1st, 2018) | 1 |
| 19:48, 19 January 2018 | 2018 PAG Wed 1 17.pdf (file) | |
1.05 MB | Brian Lee | 1 | |
| 19:46, 19 January 2018 | CyVerseAssemblyHubsPAG2018.pdf (file) | |
1.49 MB | Brian Lee | 1 | |
| 19:41, 19 January 2018 | AssemblyHubsPAG2018.pdf (file) | |
917 KB | Brian Lee | 1 | |
| 20:41, 6 December 2017 | Browsermap2017.pdf (file) | |
242 KB | Brian Lee | Jorge Presentation of Browser Layout | 1 |
| 18:27, 31 October 2017 | GenomeInformatics2017.pages (file) | |
3.82 MB | AngieHinrichs | Mac Pages (analogous to PPT) file for Genome Informatics 2017 poster on support for HGVS terms in the Genome Browser and Variant Annotation Integrator. | 1 |
| 18:22, 31 October 2017 | GenomeInformatics2017.pdf (file) | |
1.4 MB | AngieHinrichs | Poster (36"x42") presented at Genome Informatics 2017 about support for HGVS terms in the Genome Browser and Variant Annotation Integrator | 1 |
| 22:10, 28 September 2017 | GenbankPrimates.jpg (file) |  |
113 KB | Hiram | primate phylogenetic tree from genbank taxIds Given a set of taxon IDs, utilizing [http://phylot.biobyte.de/ phylot.biobyte.de] to derive this phylogenetic tree. NOTE: not necessarily completely accurate. Image drawn by [http://itol.embl.de/ itol.embl. | 1 |
| 18:17, 2 June 2017 | Btrfs filesystem readWrite performance.png (file) |  |
120 KB | Hiram | read/write performance test results for 'btrfs' filesystem | 1 |
| 22:48, 31 May 2017 | Xfs filesystem readWrite performance.png (file) |  |
97 KB | Hiram | testing read/write performance on xfs filesystem in a directory overloaded with up to 7 million files | 1 |
| 22:47, 31 May 2017 | Tmpfs filesystem readWrite performance.png (file) |  |
101 KB | Hiram | testing read/write performance into a /dev/shm directory overloaded with up to 7 million files | 1 |
| 22:45, 31 May 2017 | Ext4 fs readWrite performance.png (file) |  |
106 KB | Hiram | writing over 7 million files into one directory to see how performance degrades. | 1 |
| 18:26, 26 January 2017 | BME230 Winter 2017.ppt (file) | |
12.98 MB | Hiram | (Hiram's presentation to BME230 Winter 2016 12 January - brief browser usage introduction, assembly hub demonstration, table browser intersection, plus information on source code but not part of the discussion) | 1 |
| 22:01, 20 January 2017 | AssemblyHubsUCSC.pdf (file) | |
3.37 MB | Brian Lee | Brian Lee PAG 2017 Talk on Assembly Hubs | 1 |
| 17:41, 12 December 2016 | GtexAtUcsc Dec2016.pptx (file) | |
2.46 MB | Kate | 1 | |
| 19:50, 30 September 2016 | Ashg2016Poster.pdf (file) | |
6.72 MB | Matt Speir | 1 | |
| 17:32, 26 August 2016 | GenomicDisorders2011.pdf (file) | |
427 KB | Kuhn | Genomic Disorders meeting, Hinxton. organized by DECIPHER. | 1 |
| 17:09, 26 August 2016 | PosterIchg2016.pdf (file) | |
32.84 MB | Kuhn | Poster, reformatted from Luvina's ACMG. Used at ICHG Kyoto, 2016 | 1 |
| 17:05, 26 August 2016 | CrisporCshl2016.pdf (file) | |
1.62 MB | Max | Poster by Max Haeussler at CSHL Crispr Meeting 2016 | 1 |
| 16:46, 26 August 2016 | ACMGposter2016.pdf (file) | |
618 KB | Brian Lee | Luvina Guruvado presented poster about about accessing variation data in the GBiB and Data Integrator at the Annual Clinical Genetics Meeting (ACGM) in Tampa | 1 |
| 16:37, 26 August 2016 | CIRMposter2016.pdf (file) | |
2.51 MB | Brian Lee | Clay Fischer poster presented at the 2nd Annual CIRM retreat | 1 |
| 20:41, 15 August 2016 | GtexAtUcscTalkJuly2016.pptx (file) | |
2.72 MB | Kate | 1 | |
| 19:52, 7 July 2016 | GTEX 2016 Poster.pdf (file) | |
4.54 MB | Chmalee | 2016 GTEx Community Meeting Poster at Stanford | 1 |
| 16:14, 29 June 2016 | GTEX2015Poster.pdf (file) | |
765 KB | Kate | 1 | |
| 16:08, 29 June 2016 | GTEX2015Poster.pptx (file) | |
890 KB | Kate | 1 | |
| 00:17, 25 June 2016 | Multi-region-BoG2016.pdf (file) | |
535 KB | Galt | Poster on Multi-region (exon-mostly) new feature of the UCSC Genome Browser for the Biology of Genomes 2016 conference. | 1 |
| 20:20, 14 June 2016 | UCSC Proteomics HUPO2015 Poster.pptx (file) | |
2.93 MB | Kate | 1 | |
| 05:39, 9 June 2016 | BejeranoLab 2016-06-09.pptx (file) | |
2.92 MB | Hiram | 2 | |
| 01:10, 17 February 2016 | GTExAtUcscFeb2016.pdf (file) | |
5.26 MB | Kate | 1 | |
| 01:09, 17 February 2016 | GTExAtUcscFeb2016.pptx (file) | |
5.78 MB | Kate | 1 | |
| 00:14, 11 February 2016 | Browsermap2016.pdf (file) | |
222 KB | Brian Lee | Jorge presentation in 2016 of computer layout, includes GBiB on final page. | 1 |
| 18:22, 12 January 2016 | BME230 Winter 2016.ppt (file) | |
13.8 MB | Hiram | (Hiram's presentation to BME230 Winter 2016 12 January - brief browser usage introduction, assembly hub demonstration, table browser intersection, plus information on source code but not part of the discussion)) | 1 |
| 23:05, 10 December 2015 | GTExAtUcsc Dec2015.pdf (file) | |
4.06 MB | Kate | 1 | |
| 23:04, 10 December 2015 | GTExAtUcsc Dec2015.pptx (file) | |
4.82 MB | Kate | 1 | |
| 00:51, 10 November 2015 | INSTALL RNAplot.sh (file) | |
715 bytes | David Hoover | Installation script for compiling RNAplot as a static executable. | 1 |
| 17:43, 12 August 2015 | RunLastzChain sh.txt (file) | |
4 KB | Jonathan Casper | Removed B=0 from lastz parameters - it had been included by mistake. (https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/BZjUyNgRKnM/ESMVNVvJDQAJ) | 2 |
| 23:01, 2 July 2015 | ENCODEusersMtg.ppt (file) | |
8.91 MB | Pauline | 1 | |
| 16:38, 23 June 2015 | File-GTEX2015Poster.pdf (file) | |
765 KB | Kate | GTEx Data in the UCSC Genome Browser Poster presented at the GTEx (Genotype Tissue Expression) Community Meeting Chicago, June 23-24, 2015 | 1 |
| 21:21, 16 June 2015 | BioengSymp2015Poster.pptx (file) | |
2.39 MB | Matt Speir | (poster on the Data Integrator and GBiB presented at UC-wide Bioengineering Symposium, UCSC, June 2015.) | 1 |
| 21:19, 16 June 2015 | BioengSymp2015Poster.pdf (file) | |
3.15 MB | Matt Speir | (poster on the Data Integrator and GBiB presented at UC-wide Bioengineering Symposium, UCSC, June 2015.) | 1 |
| 18:47, 1 May 2015 | Acmg2015poster.pdf (file) | |
2 MB | Kuhn | Annual meeting American Society for Medical Genetics, Salt Lake City. | 1 |
| 18:19, 1 May 2015 | BoG2015DataIntegrator.pptx (file) | |
2.3 MB | AngieHinrichs | poster on the Data Integrator presented at Biology of Genomes, CSHL, May 2015. | 1 |
| 18:17, 1 May 2015 | BoG2015DataIntegrator.pdf (file) | |
3.55 MB | AngieHinrichs | poster on the Data Integrator, presented at Biology of Genomes, CSHL, 2015. | 1 |
