UCSC Multiple Alignments: Difference between revisions
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<UL> | <UL> | ||
<LI>Lizard 7-way [[AnoCar2 conservation alignment]] May 2011</LI> | <LI> Mouse 35-way [[Mm39 35-way conservation alignment]] Jan 2021, [[Mm39 35-way conservation lastz parameters|lastz parameters]], [[Mm39 35-way Genome size statistics|size statistics]]</LI> | ||
<LI> Zebrafish 12-way [[DanRer10 12-way conservation alignment]] Mar 2020, [[DanRer10 12-way conservation lastz parameters|lastz parameters]], [[DanRer10 12-way Genome size statistics|size statistics]]</LI> | |||
<LI> C. elegans 135-way [[Ce11 135-way conservation alignment]] Dec 2018, [[Ce11 135-way conservation lastz parameters|lastz parameters]], [[Ce11 135-way Genome size statistics|size statistics]]</LI> | |||
<LI> D. melanogaster 124-way [[Dm6 124-way conservation alignment]] Dec 2018, [[Dm6 124-way conservation lastz parameters|lastz parameters]], [[Dm6 124-way Genome size statistics|size statistics]]</LI> | |||
<LI> Chicken 77-way [[GalGal6 77-way conservation alignment]] Dec 2018, [[GalGal6 77-way conservation lastz parameters|lastz parameters]], [[GalGal6 77-way Genome size statistics|size statistics]]</LI> | |||
<LI> Mouse lemur 3-way [[MicMur3 3-way conservation alignment]] Jun 2018, [[MicMur3 3-way conservation lastz parameters|lastz parameters]], [[MicMur3 3-way Genome size statistics|size statistics]]</LI> | |||
<LI> Bushbaby 3-way [[OtoGar3 3-way conservation alignment]] Feb 2018, [[OtoGar3 3-way conservation lastz parameters|lastz parameters]], [[OtoGar3 3-way Genome size statistics|size statistics]]</LI> | |||
<LI> Guinea pig 6-way [[CavPor3 6-way conservation alignment]] Dec 2017, [[CavPor3 6-way conservation lastz parameters|lastz parameters]], [[CavPor3 6-way Genome size statistics|size statistics]]</LI> | |||
<LI> Human 5-way (with tupChi1) [[Hg38 5-way conservation alignment]] Dec 2017, [[Hg38 5-way conservation lastz parameters|lastz parameters]], [[Hg38 5-way Genome size statistics|size statistics]]</LI> | |||
<LI> Malayan flying lemur 6-way [[GalVar1 6-way conservation alignment]] Dec 2017, [[GalVar1 6-way conservation lastz parameters|lastz parameters]], [[GalVar1 6-way Genome size statistics|size statistics]]</LI> | |||
<LI> Chinese tree shrew 5-way [[TupChi1 5-way conservation alignment]] Ded 2017, [[TupChi1 5-way conservation lastz parameters|lastz parameters]], [[TupChi1 5-way Genome size statistics|size statistics]]</LI> | |||
<LI> Human 30-way [[Hg38 30-way conservation alignment]] November 2017, [[Hg38 30-way conservation lastz parameters|lastz parameters]], [[Hg38 30-way Genome size statistics|size statistics]]</LI> | |||
<LI> Human 27-way [[Hg38 27-way conservation alignment]] October 2017, [[Hg38 27-way conservation lastz parameters|lastz parameters]], [[Hg38 27-way Genome size statistics|size statistics]]</LI> | |||
<LI> X. tropicalis 11-way [[XenTro9 11-way conservation alignment]] May 2017, [[XenTro9 11-way conservation lastz parameters|lastz parameters]], [[XenTro9 11-way Genome size statistics|size statistics]]</LI> | |||
<LI> Malayan flying lemur 4-way (with tupChi1) [[GalVar1 4-way conservation alignment]] Apr 2017, [[GalVar1 4-way conservation lastz parameters|lastz parameters]], [[GalVar1 4-way Genome size statistics|size statistics]]</LI> | |||
<LI> Mouse 4-way (with tupChi1) [[Mm10 4-way conservation alignment]] Apr 2017, [[Mm10 4-way conservation lastz parameters|lastz parameters]], [[Mm10 4-way Genome size statistics|size statistics]]</LI> | |||
<LI> Human 4-way (with tupChi1) [[Hg38 4-way conservation alignment]] Apr 2017, [[Hg38 4-way conservation lastz parameters|lastz parameters]], [[Hg38 4-way Genome size statistics|size statistics]]</LI> | |||
<LI> Chinese tree shrew 4-way [[TupChi1 4-way conservation alignment]] Mar 2017, [[TupChi1 4-way conservation lastz parameters|lastz parameters]], [[TupChi1 4-way Genome size statistics|size statistics]]</LI> | |||
<LI> Rat 20-way [[Rn6 20-way conservation alignment]] Jan 2017, [[Rn6 20-way conservation lastz parameters|lastz parameters]], [[Rn6 20-way Genome size statistics|size statistics]]</LI> | |||
<LI> Malayan flying lemur 5-way [[GalVar1 5-way conservation alignment]] May 2016, [[GalVar1 5-way conservation lastz parameters|lastz parameters]], [[GalVar1 5-way Genome size statistics|size statistics]]</LI> | |||
<LI> Guinea pig 5-way [[CavPor3 5-way conservation alignment]] May 2016, [[CavPor3 5-way conservation lastz parameters|lastz parameters]], [[CavPor3 5-way Genome size statistics|size statistics]]</LI> | |||
<LI> C. elegans 26-way [[Ce11 26-way conservation alignment]] Jul. 2015, [[Ce11 26-way conservation lastz parameters|lastz parameters]], [[Ce11 26-way Genome size statistics|size statistics]]</LI> | |||
<LI> Tarsier 20-way [[TarSyr2 20-way conservation alignment]] Apr. 2015, [[TarSyr2 20-way conservation lastz parameters|lastz parameters]], [[TarSyr2 20-way Genome size statistics|size statistics]]</LI> | |||
<LI> Human 20-way [[Hg38 20-way conservation alignment]] Apr. 2015, [[Hg38 20-way conservation lastz parameters|lastz parameters]], [[Hg38 20-way Genome size statistics|size statistics]]</LI> | |||
<LI>Human 100-way [[Hg38 100-way conservation alignment]] Apr. 2015, [[Hg38 100-way conservation lastz parameters|lastz parameters]], [[Hg38 100-way Genome size statistics|size statistics]]</LI> | |||
<LI> Human 17-way [[Hg38 17-way conservation alignment]] Dec. 2014, [[Hg38 17-way conservation lastz parameters|lastz parameters]], [[Hg38 17-way Genome size statistics|size statistics]]</LI> | |||
<LI> Tarsier 17-way [[TarSyr2 17-way conservation alignment]] Dec. 2014, [[TarSyr2 17-way conservation lastz parameters|lastz parameters]], [[TarSyr2 17-way Genome size statistics|size statistics]]</LI> | |||
<LI> D. melanogaster 27-way [[Dm6 27-way conservation alignment]] Nov. 2014, [[Dm6 27-way conservation lastz parameters|lastz parameters]], [[Dm6 27-way Genome size statistics|size statistics]]</LI> | |||
<LI> Human 7-way [[Hg38 7-way conservation alignment]] Jun. 2014, [[Hg38 7-way conservation lastz parameters|lastz parameters]], [[Hg38 7-way Genome size statistics|size statistics]]</LI> | |||
<LI> Rat 13-way [[Rn5 13-way conservation alignment]] Jun. 2014, [[Rn5 13-way conservation lastz parameters|lastz parameters]], [[Rn5 13-way Genome size statistics|size statistics]]</LI> | |||
<LI>Human 100-way [[Hg19 100way conservation alignment]] Sep. 2013, [[Hg19 100way conservation lastz parameters|lastz parameters]], [[Hg19 100way Genome size statistics|size statistics]]</LI> | |||
<LI>Lamprey 7-way [[PetMar2 conservation alignment]] Nov. 2012, [[PetMar2 conservation lastz parameters|lastz parameters]], [[PetMar2 Genome size statistics|size statistics]]</LI> | |||
<LI>Medium ground finch 7-way [[GeoFor1 conservation alignment]] Aug. 2012, [[GeoFor1 conservation lastz parameters|lastz parameters]], [[GeoFor1 Genome size statistics|size statistics]]</LI> | |||
<LI>Mouse 60-way [[Mm10 conservation alignment]] Apr. 2012, [[Mm10 conservation lastz parameters|lastz parameters]], [[Mm10 Genome size statistics|size statistics]]</LI> | |||
<LI>Fugu 8-way [[Fr3 conservation alignment]] Feb. 2012, [[Fr3 conservation lastz parameters|lastz parameters]], [[Fr3 Genome size statistics|size statistics]]</LI> | |||
<LI>Gorilla 11-way [[GorGor3 conservation alignment]] May 2011, [[GorGor3 conservation lastz parameters|lastz parameters]], [[GorGor3 Genome size statistics|size statistics]]</LI> | |||
<LI>X. tropicalis 9-way [[XenTro3 conservation alignment]] Sept. 2011, [[XenTro3 conservation lastz parameters|lastz parameters]], [[XenTro3 Genome size statistics|size statistics]]</LI> | |||
<LI>C. elegans 9-way WS220 [[Ce10 conservation alignment]] June 2011, [[Ce10 conservation lastz parameters|lastz parameters]], [[Ce10 Genome size statistics|size statistics]]</LI> | |||
<LI>Lizard 7-way [[AnoCar2 conservation alignment]] May 2011, [[AnoCar2 conservation lastz parameters|lastz parameters]], [[AnoCar2 Genome size statistics|size statistics]]</LI> | |||
<LI>Chimp 8-way [[PanTro3 conservation alignment]], May 2011, [[PanTro3 conservation lastz parameters|lastz parameters]], [[PanTro3 Genome size statistics|size statistics]]</LI> | |||
<LI>Marmoset 13-way [[CalJac3 conservation alignment]], May 2011, [[CalJac3 conservation lastz parameters|lastz parameters]], [[Marmoset calJac3 13-way size statistics|size statistics]]</LI> | |||
<LI>Cat 6-way [[FelCat4 conservation alignment]], Jan. 2011, [[FelCat4 conservation lastz parameters|lastz parameters]], [[FelCat4 Genome size statistics|size statistics]]</LI> | |||
<LI>Zebrafish 8-way [[DanRer7 conservation alignment]], Jan. 2011, [[DanRer7 conservation lastz parameters|lastz parameters]], [[DanRer7 Genome size statistics|size statistics]]</LI> | |||
<LI>Human 46-way [[Hg19 conservation alignment]] Nov. 2010, [[Hg19 conservation lastz parameters|lastz parameters]], [[Hg19 Genome size statistics|size statistics]], [[Human/hg19/GRCh37_46-way_multiple_alignment|errata]]</LI> | |||
<LI>C. elegans 10-way [[Ce9 conservation alignment]], Oct. 2010, [[Ce9 conservation lastz parameters|lastz parameters]], [[Ce9 Genome size statistics|size statistics]]</LI> | |||
<LI>Mouse 30-way [[Mm9_multiple_alignment]] Aug. 2009 | |||
<LI>Human 44-way [[Hg18 44way alignment|Hg18 conservation alignment]] Dec. 2008, [[Hg18 44way blastz parameters|blastz parameters]], [[Genome size statistics|size statistics]]</LI> | |||
<LI>Horse 6-way [[EquCab2 conservation alignment]], Dec. 2008, [[EquCab2 conservation lastz parameters|lastz parameters]], [[EquCab2 Genome size statistics|size statistics]]</LI> | |||
<LI>Lamprey 6-way [[PetMar1 conservation alignment]] May 2008, [[PetMar1 conservation lastz parameters|lastz parameters]], [[PetMar1 Genome size statistics|size statistics]]</LI> | |||
<LI>Orangutan 8-way [[PonAbe2 conservation alignment]], Dec. 2007, [[PonAbe2 conservation lastz parameters|blastz parameters]], [[PonAbe2 Genome size statistics|size statistics]]</LI> | |||
<LI>Platypus 6-way [[OrnAna1 conservation alignment]], May 2007, [[OrnAna1 conservation lastz parameters|blastz parameters]], [[OrnAna1 Genome size statistics|size statistics]]</LI> | |||
</UL> | </UL> | ||
Latest revision as of 00:58, 5 January 2021
- Mouse 35-way Mm39 35-way conservation alignment Jan 2021, lastz parameters, size statistics
- Zebrafish 12-way DanRer10 12-way conservation alignment Mar 2020, lastz parameters, size statistics
- C. elegans 135-way Ce11 135-way conservation alignment Dec 2018, lastz parameters, size statistics
- D. melanogaster 124-way Dm6 124-way conservation alignment Dec 2018, lastz parameters, size statistics
- Chicken 77-way GalGal6 77-way conservation alignment Dec 2018, lastz parameters, size statistics
- Mouse lemur 3-way MicMur3 3-way conservation alignment Jun 2018, lastz parameters, size statistics
- Bushbaby 3-way OtoGar3 3-way conservation alignment Feb 2018, lastz parameters, size statistics
- Guinea pig 6-way CavPor3 6-way conservation alignment Dec 2017, lastz parameters, size statistics
- Human 5-way (with tupChi1) Hg38 5-way conservation alignment Dec 2017, lastz parameters, size statistics
- Malayan flying lemur 6-way GalVar1 6-way conservation alignment Dec 2017, lastz parameters, size statistics
- Chinese tree shrew 5-way TupChi1 5-way conservation alignment Ded 2017, lastz parameters, size statistics
- Human 30-way Hg38 30-way conservation alignment November 2017, lastz parameters, size statistics
- Human 27-way Hg38 27-way conservation alignment October 2017, lastz parameters, size statistics
- X. tropicalis 11-way XenTro9 11-way conservation alignment May 2017, lastz parameters, size statistics
- Malayan flying lemur 4-way (with tupChi1) GalVar1 4-way conservation alignment Apr 2017, lastz parameters, size statistics
- Mouse 4-way (with tupChi1) Mm10 4-way conservation alignment Apr 2017, lastz parameters, size statistics
- Human 4-way (with tupChi1) Hg38 4-way conservation alignment Apr 2017, lastz parameters, size statistics
- Chinese tree shrew 4-way TupChi1 4-way conservation alignment Mar 2017, lastz parameters, size statistics
- Rat 20-way Rn6 20-way conservation alignment Jan 2017, lastz parameters, size statistics
- Malayan flying lemur 5-way GalVar1 5-way conservation alignment May 2016, lastz parameters, size statistics
- Guinea pig 5-way CavPor3 5-way conservation alignment May 2016, lastz parameters, size statistics
- C. elegans 26-way Ce11 26-way conservation alignment Jul. 2015, lastz parameters, size statistics
- Tarsier 20-way TarSyr2 20-way conservation alignment Apr. 2015, lastz parameters, size statistics
- Human 20-way Hg38 20-way conservation alignment Apr. 2015, lastz parameters, size statistics
- Human 100-way Hg38 100-way conservation alignment Apr. 2015, lastz parameters, size statistics
- Human 17-way Hg38 17-way conservation alignment Dec. 2014, lastz parameters, size statistics
- Tarsier 17-way TarSyr2 17-way conservation alignment Dec. 2014, lastz parameters, size statistics
- D. melanogaster 27-way Dm6 27-way conservation alignment Nov. 2014, lastz parameters, size statistics
- Human 7-way Hg38 7-way conservation alignment Jun. 2014, lastz parameters, size statistics
- Rat 13-way Rn5 13-way conservation alignment Jun. 2014, lastz parameters, size statistics
- Human 100-way Hg19 100way conservation alignment Sep. 2013, lastz parameters, size statistics
- Lamprey 7-way PetMar2 conservation alignment Nov. 2012, lastz parameters, size statistics
- Medium ground finch 7-way GeoFor1 conservation alignment Aug. 2012, lastz parameters, size statistics
- Mouse 60-way Mm10 conservation alignment Apr. 2012, lastz parameters, size statistics
- Fugu 8-way Fr3 conservation alignment Feb. 2012, lastz parameters, size statistics
- Gorilla 11-way GorGor3 conservation alignment May 2011, lastz parameters, size statistics
- X. tropicalis 9-way XenTro3 conservation alignment Sept. 2011, lastz parameters, size statistics
- C. elegans 9-way WS220 Ce10 conservation alignment June 2011, lastz parameters, size statistics
- Lizard 7-way AnoCar2 conservation alignment May 2011, lastz parameters, size statistics
- Chimp 8-way PanTro3 conservation alignment, May 2011, lastz parameters, size statistics
- Marmoset 13-way CalJac3 conservation alignment, May 2011, lastz parameters, size statistics
- Cat 6-way FelCat4 conservation alignment, Jan. 2011, lastz parameters, size statistics
- Zebrafish 8-way DanRer7 conservation alignment, Jan. 2011, lastz parameters, size statistics
- Human 46-way Hg19 conservation alignment Nov. 2010, lastz parameters, size statistics, errata
- C. elegans 10-way Ce9 conservation alignment, Oct. 2010, lastz parameters, size statistics
- Mouse 30-way Mm9_multiple_alignment Aug. 2009
- Human 44-way Hg18 conservation alignment Dec. 2008, blastz parameters, size statistics
- Horse 6-way EquCab2 conservation alignment, Dec. 2008, lastz parameters, size statistics
- Lamprey 6-way PetMar1 conservation alignment May 2008, lastz parameters, size statistics
- Orangutan 8-way PonAbe2 conservation alignment, Dec. 2007, blastz parameters, size statistics
- Platypus 6-way OrnAna1 conservation alignment, May 2007, blastz parameters, size statistics
