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Date Name Thumbnail Size User Description Versions
00:51, 10 November 2015 INSTALL RNAplot.sh (file) 715 bytes David Hoover Installation script for compiling RNAplot as a static executable. 1
17:43, 12 August 2015 RunLastzChain sh.txt (file) 4 KB Jonathan Casper Removed B=0 from lastz parameters - it had been included by mistake. (https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/BZjUyNgRKnM/ESMVNVvJDQAJ) 2
23:01, 2 July 2015 ENCODEusersMtg.ppt (file) 8.91 MB Pauline   1
16:38, 23 June 2015 File-GTEX2015Poster.pdf (file) 765 KB Kate GTEx Data in the UCSC Genome Browser Poster presented at the GTEx (Genotype Tissue Expression) Community Meeting Chicago, June 23-24, 2015 1
21:21, 16 June 2015 BioengSymp2015Poster.pptx (file) 2.39 MB Matt Speir (poster on the Data Integrator and GBiB presented at UC-wide Bioengineering Symposium, UCSC, June 2015.) 1
21:19, 16 June 2015 BioengSymp2015Poster.pdf (file) 3.15 MB Matt Speir (poster on the Data Integrator and GBiB presented at UC-wide Bioengineering Symposium, UCSC, June 2015.) 1
18:47, 1 May 2015 Acmg2015poster.pdf (file) 2 MB Kuhn Annual meeting American Society for Medical Genetics, Salt Lake City. 1
18:19, 1 May 2015 BoG2015DataIntegrator.pptx (file) 2.3 MB AngieHinrichs poster on the Data Integrator presented at Biology of Genomes, CSHL, May 2015. 1
18:17, 1 May 2015 BoG2015DataIntegrator.pdf (file) 3.55 MB AngieHinrichs poster on the Data Integrator, presented at Biology of Genomes, CSHL, 2015. 1
19:01, 9 April 2015 SpongeAwg.pptx (file) 15.07 MB Jimkent   1
18:53, 9 April 2015 EbolaUcsfSept192014.pptx (file) 53 KB Jimkent Presentation on Ebola and Genome Browser given at UCSF. 1
17:43, 19 March 2015 MatrixSummary pl.txt (file) 6 KB Hiram used in lastz tuning procedure, examines output of the four lastz_D outputs to survey the differences 1
17:17, 19 March 2015 Create scores file control.txt (file) 653 bytes Hiram Parameters from Bob Harris for lastz tuning procedure 1
17:14, 19 March 2015 Expand scores file py.txt (file) 4 KB Hiram Script created by Bob Harris for lastz tuning operations 1
17:10, 19 March 2015 AdjustSizes pl.txt (file) 3 KB Hiram chrom.sizes files are now expected to exist as created by selectedFasta.sh 2
17:09, 19 March 2015 SelectedFasta sh.txt (file) 2 KB Hiram generalize the chrom.size creation and noMask option on fasta creation 2
23:34, 18 March 2015 TopAll sh.txt (file) 2 KB Hiram script used in lastz tuning procedure to run lastz_D on different sets of DNA sequences from query and target 1
23:18, 18 March 2015 MafScoreSizeScan pl.txt (file) 2 KB Hiram script used to scan a MAF file to extract scores, sizes, and coverage statistics of each alignment block. Used in lastz tuning procedures. 1
20:50, 11 March 2015 HgAi genecats 15 03 11.pdf (file) 448 KB AngieHinrichs slides for Angie's presentation on hgAi (Annotation Integrator) March 11, 2015 1
20:47, 11 March 2015 HgAi genecats 15 03 11.pptx (file) 453 KB AngieHinrichs slides for Angie's presentation on hgAi (Annotation Integrator) March 15, 2015 1
23:39, 25 February 2015 G10K2015.pdf (file) 914 KB Brianraney   1
18:03, 13 October 2014 Ashg2014.pdf (file) 914 KB Brianraney   1
22:02, 19 September 2014 GenomeInformatics2014Poster.pdf (file) 64 KB Galt Poster made by Galt Barber for Genome Informatics 2014 conference in Cambridge, UK. 1
22:28, 20 May 2014 KarenMigaCentromere.pdf (file) 43.49 MB Ann Karen Miga's presentation to the Genome Browser group on 19 May 2014: GRCh38 Centromere Reference Models. 1
19:58, 9 April 2014 Neur1MarsupPlacent2.png (file) 121 KB Tomemerald   1
20:59, 4 February 2014 BME230 Winter 2014.ppt (file) 13.79 MB Hiram Hiram's presentation to BME230 Winter 2014 11 February - brief browser usage introduction, assembly hub demonstration, table browser intersection, plus information on source code but not part of the discussion) 1
13:58, 1 November 2013 GI2013.pdf (file) 1.25 MB Brianraney   1
20:37, 10 October 2013 MammothLoop2.jpg (file) 61 KB Tomemerald   1
20:33, 10 October 2013 TRPV3compGen.jpg (file) 442 KB Tomemerald   1
20:13, 10 October 2013 AvianCRY1.jpg (file) 149 KB Tomemerald   1
18:45, 18 September 2013 Dependency-Review-20130826.pdf (file) 35 KB Gary Moro A review of Genome Browser dependencies and the move to SDSC. 1
21:54, 23 August 2013 Browsermap.pdf (file) 201 KB Gary Moro This is the correctly updated file. 3
20:05, 21 June 2013 TrackHub presentation.pdf (file) 2.33 MB Tracy.ballinger   1
19:11, 21 June 2013 TrackHub presentation.ppt (file) 1.9 MB Tracy.ballinger   1
22:36, 6 June 2013 AssemblyHubs BoG 2013.pptx (file) 2.72 MB Hiram Assembly Hubs, Biology of Genomes meeting 2013 CSHL 1
22:35, 6 June 2013 AssemblyHubs BoG 2013.pdf (file) 3.06 MB Hiram Assembly Hubs, Biology of Genomes meeting 2013 CSHL 1
16:31, 7 May 2013 BoG2013variationSampleTrack.txt (file) 290 bytes Rhead   1
16:14, 7 May 2013 BoG2013variation.pdf (file) 2.3 MB Rhead   2
16:13, 7 May 2013 BoG2013variation.pptx (file) 2.24 MB Rhead   6
20:52, 1 May 2013 HgApi.ppt (file) 732 KB Ann Larry Meyer's Genecats talk on the Genome Browser API. 1
06:48, 1 May 2013 BoG2013variationAbstract.txt (file) 2 KB Rhead   3
22:29, 20 March 2013 UcscGenes.pptx (file) 3.19 MB Brianraney   1
22:28, 20 March 2013 UcscGenes.pdf (file) 2.97 MB Brianraney   1
20:44, 18 March 2013 18MarMoveEllsemere5.gif (file) 739 KB Tomemerald   1
21:49, 17 March 2013 Ascat2010.gif (file) 6.07 MB Tomemerald   2
21:48, 17 March 2013 Ascat2013.gif (file) 3.7 MB Tomemerald   1
21:46, 17 March 2013 Ascat2012.gif (file) 8.13 MB Tomemerald   1
21:44, 17 March 2013 Ascat2011.gif (file) 7.81 MB Tomemerald   1
11:56, 16 March 2013 Day74ascat3d.gif (file) 3.62 MB Tomemerald   1
22:02, 15 March 2013 Jaxa3rdcropPicker415d.gif (file) 161 KB Tomemerald   1
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